Commits · be46d9dfc912d6a1ee48c8f7d5b4870ff97e5cad · Dominik Brilhaus / Facultative CAM in Talinum

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Mar 14, 2025
- align with spec: isaSampleToRawData · be46d9df
  Dominik Brilhaus authored 8 months ago
  
  be46d9df
- outcomment tests · 7aa6183e
  Dominik Brilhaus authored 8 months ago
  
  7aa6183e
- align with spec: deseq2 (needs fix, missing dep) · 6c9a0b87
  Dominik Brilhaus authored 8 months ago
  
  6c9a0b87
Dec 02, 2024
- add email adresses · 0d104868
  Dominik Brilhaus authored 11 months ago
  
  0d104868
Nov 18, 2024
- Delete placeholder.cwl to test validation · 43d115dd
  Dominik Brilhaus authored 11 months ago
  
  43d115dd
Nov 10, 2024
- switch metadata input · 46773aa6
  Dominik Brilhaus authored Nov 10, 2024
  
  46773aa6
Nov 07, 2024
- fix isa sample process reader · a3a1fdb8
  Dominik Brilhaus authored Nov 7, 2024
  
  a3a1fdb8
- fix issue with data nodes now being objects (not free text) · 7333e2b6
  Dominik Brilhaus authored Nov 7, 2024
  
  7333e2b6
- add cwl dummies to test validation · edc6e7fa
  Dominik Brilhaus authored Nov 7, 2024
  
  edc6e7fa
- allow factor list · 070b5035
  Dominik Brilhaus authored Nov 7, 2024
  
  070b5035
- multi-docker works, cleanup · ffdece03
  Dominik Brilhaus authored Nov 7, 2024
  
  ffdece03
Nov 05, 2024
- try building deseq2 docker · 6efab19f
  Dominik Brilhaus authored Nov 5, 2024
  
  6efab19f
- switch docker · 4154e6a8
  Dominik Brilhaus authored Nov 5, 2024
  
  4154e6a8
- notes · 7c076ffe
  Dominik Brilhaus authored Nov 5, 2024
  
  7c076ffe
- try fix fsharp isa read · 8aaa8665
  Dominik Brilhaus authored Nov 5, 2024
  
  8aaa8665
- deseq cwl works (without docker) · 8a4c41b4
  Dominik Brilhaus authored Nov 5, 2024
  
  8a4c41b4
- towards wrap deseq in cwl · 95b5b5bd
  Dominik Brilhaus authored Nov 5, 2024
  
  95b5b5bd
Nov 04, 2024
- [needs f# fix] add isaSampleToRawDataSeq · 28e57415
  Dominik Brilhaus authored Nov 4, 2024
  
  28e57415
- add deseq2 analysis · bf30e495
  Dominik Brilhaus authored Nov 4, 2024
  
  bf30e495
Aug 05, 2024
- update workflow image · c9adfe2e
  Dominik Brilhaus authored Aug 5, 2024
  
  c9adfe2e
- replace docker, index failed with 0.51 · d0c7d205
  Dominik Brilhaus authored Aug 5, 2024
  
  d0c7d205
- change kallisto container to v 0.51 · c9a79799
  Dominik Brilhaus authored Aug 5, 2024
  
  c9a79799
- allow to adapt which part of the file name(s) shall be kept · 20f7b1f7
  Dominik Brilhaus authored Aug 5, 2024
  
  20f7b1f7
Aug 02, 2024
- trying to fix use of R with CWL · cb06bbb8
  Dominik Brilhaus authored Aug 2, 2024
  
  cb06bbb8
- kallisto workflow results all samples · 2dbb8cc5
  Dominik Brilhaus authored Aug 2, 2024
  
  2dbb8cc5
- collect results in single folder · 312c4907
  Dominik Brilhaus authored Aug 2, 2024
  
  312c4907
- hard code file name slicing works · c54d4a87
  Dominik Brilhaus authored Aug 2, 2024
  
  c54d4a87
- somewhat generic kallisto with multiple samples worked · 8bc5ebe5
  Dominik Brilhaus authored Aug 2, 2024
  
  8bc5ebe5
- design workflow · e92c3586
  Dominik Brilhaus authored Aug 2, 2024
  
  e92c3586
- first steps re-design cwl based analysis · 9214eb5e
  Dominik Brilhaus authored Aug 2, 2024
  
  9214eb5e
- restructure kallisto pipeline · 68c17471
  Dominik Brilhaus authored Aug 2, 2024
  
  68c17471
- remove old scripts, cwl approaches, run results · 163979ff
  Dominik Brilhaus authored Aug 2, 2024
  
  163979ff
Jan 15, 2024
- arcitect save · b17d8d73
  Dominik Brilhaus authored Jan 15, 2024
  
  b17d8d73
Mar 24, 2023
- docker-free kallisto sleuth · f31bbdea
  Dominik Brilhaus authored Mar 24, 2023
  
  f31bbdea
- docker-free kallisto collect · fe52b95a
  Dominik Brilhaus authored Mar 24, 2023
  
  fe52b95a
- docker-free kallisto index · 9fda69ff
  Dominik Brilhaus authored Mar 24, 2023
  
  9fda69ff
- docker-free kallisto quant · 384e4ef6
  Dominik Brilhaus authored Mar 24, 2023
  
  384e4ef6
- docker-less shiny prep · 1f05dd17
  Dominik Brilhaus authored Mar 24, 2023
  
  1f05dd17
- dockerless merge isa · 44c39387
  Dominik Brilhaus authored Mar 24, 2023
  
  44c39387
- remove scheme · 008f0b05
  Dominik Brilhaus authored Mar 24, 2023
  
  008f0b05

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Commits · be46d9dfc912d6a1ee48c8f7d5b4870ff97e5cad