Commits · edc6e7fa66e3637e2fa93a18fa6efe9f9c35112c · Dominik Brilhaus / Facultative CAM in Talinum

Nov 07, 2024
- add cwl dummies to test validation · edc6e7fa
  Dominik Brilhaus authored 6 months ago
  
  edc6e7fa
- Merge branch 'addfactor' into 'main' · ab95fefd
  Dominik Brilhaus authored 6 months ago
  
  fix docker See merge request !4
  ab95fefd
- allow factor list · 070b5035
  Dominik Brilhaus authored 6 months ago
  
  070b5035
- multi-docker works, cleanup · ffdece03
  Dominik Brilhaus authored 6 months ago
  
  ffdece03
Nov 05, 2024
- try building deseq2 docker · 6efab19f
  Dominik Brilhaus authored 6 months ago
  
  6efab19f
- try fixing isa nodes · b9409528
  Dominik Brilhaus authored 6 months ago
  
  b9409528
- switch docker · 4154e6a8
  Dominik Brilhaus authored 6 months ago
  
  4154e6a8
- notes · 7c076ffe
  Dominik Brilhaus authored 6 months ago
  
  7c076ffe
- fix isa nodes · 23d5406d
  Dominik Brilhaus authored 6 months ago
  
  23d5406d
- try fix fsharp isa read · 8aaa8665
  Dominik Brilhaus authored 6 months ago
  
  8aaa8665
- Merge branch 'deseq2' into 'main' · 1a6c288a
  Dominik Brilhaus authored 6 months ago
  
  Deseq2 See merge request !3
  1a6c288a
- deseq cwl works (without docker) · 8a4c41b4
  Dominik Brilhaus authored 6 months ago
  
  8a4c41b4
- towards wrap deseq in cwl · 95b5b5bd
  Dominik Brilhaus authored 6 months ago
  
  95b5b5bd
Nov 04, 2024
- [needs f# fix] add isaSampleToRawDataSeq · 28e57415
  Dominik Brilhaus authored 6 months ago
  
  28e57415
- add deseq2 analysis · bf30e495
  Dominik Brilhaus authored 6 months ago
  
  bf30e495
Sep 13, 2024
- Merge branch 'main' of https://git.nfdi4plants.org/brilator/Facultative-CAM-in-Talinum · 9fd2c9f4
  Dominik Brilhaus authored 7 months ago
  
  9fd2c9f4
- lfs test fastq.gz · e73f698a
  Dominik Brilhaus authored 7 months ago
  
  e73f698a
Aug 05, 2024
- Merge branch 'kallisto-cwl' into 'main' · ccdc3394
  Dominik Brilhaus authored 9 months ago
  
  Kallisto cwl See merge request !2
  ccdc3394
- add log last run · 0bf45cab
  Dominik Brilhaus authored 9 months ago
  
  0bf45cab
- re-run kallisto with v 0.50 · 449cda92
  Dominik Brilhaus authored 9 months ago
  
  449cda92
- update workflow image · c9adfe2e
  Dominik Brilhaus authored 9 months ago
  
  c9adfe2e
- replace docker, index failed with 0.51 · d0c7d205
  Dominik Brilhaus authored 9 months ago
  
  d0c7d205
- change kallisto container to v 0.51 · c9a79799
  Dominik Brilhaus authored 9 months ago
  
  c9a79799
- allow to adapt which part of the file name(s) shall be kept · 20f7b1f7
  Dominik Brilhaus authored 9 months ago
  
  20f7b1f7
Aug 02, 2024
- Merge branch 'cwl' into 'main' · 960e623a
  Dominik Brilhaus authored 9 months ago
  
  Cwl See merge request !1
  960e623a
- trying to fix use of R with CWL · cb06bbb8
  Dominik Brilhaus authored 9 months ago
  
  cb06bbb8
- kallisto workflow results all samples · 2dbb8cc5
  Dominik Brilhaus authored 9 months ago
  
  2dbb8cc5
- fix lfs · bad60607
  Dominik Brilhaus authored 9 months ago
  
  bad60607
- collect results in single folder · 312c4907
  Dominik Brilhaus authored 9 months ago
  
  312c4907
- hard code file name slicing works · c54d4a87
  Dominik Brilhaus authored 9 months ago
  
  c54d4a87
- somewhat generic kallisto with multiple samples worked · 8bc5ebe5
  Dominik Brilhaus authored 9 months ago
  
  8bc5ebe5
- design workflow · e92c3586
  Dominik Brilhaus authored 9 months ago
  
  e92c3586
- first steps re-design cwl based analysis · 9214eb5e
  Dominik Brilhaus authored 9 months ago
  
  9214eb5e
- restructure kallisto pipeline · 68c17471
  Dominik Brilhaus authored 9 months ago
  
  68c17471
- remove old scripts, cwl approaches, run results · 163979ff
  Dominik Brilhaus authored 9 months ago
  
  163979ff
- remove manual mermaid · 03497658
  Dominik Brilhaus authored 9 months ago
  
  03497658
- remove old helper files · 722d2267
  Dominik Brilhaus authored 9 months ago
  
  722d2267
Jul 10, 2024
- Merge branch 'main' of https://git.nfdi4plants.org/brilator/Facultative-CAM-in-Talinum · 5d502863
  Dominik Brilhaus authored 9 months ago
  
  5d502863
- add validation packages · a649a2c9
  Dominik Brilhaus authored 9 months ago
  
  a649a2c9
- test commit to trigger pipeline · 8070537c
  Dominik Brilhaus authored 9 months ago
  
  8070537c