Skip to content
Snippets Groups Projects
Commit 0f6a7459 authored by Dominik Brilhaus's avatar Dominik Brilhaus
Browse files

add key resources as markdown table

parent 0a8c964f
No related branches found
No related tags found
1 merge request!1add key resources as markdown table
REAGENT or RESOURCE | SOURCE | IDENTIFIER
--------------------|--------|-----------
Bacterial and virus strains
Escherichia coli MachI | University of Cologne, Germany (Prof. Dr. Ute Hoecker) | N/A
Agrobacterium tumefaciens GV3101::pMP90RK | this paper | N/A
Agrobacterium tumefaciens GV3101::pBIN61-p19 | this paper | N/A
Chemicals, peptides, and recombinant proteins
Horseradish peroxidase | Sigma-Aldrich | P6782; CAS: 9003-99-0
L-012 | Wako Chemicals | 120-04891; CAS: 143556-24-5
Rifampicin | Roth | 4163.2; CAS: 13292-46-1
Kanamycin | Duchefa | K0126.0010; CAS: 25389-94-0
Carbenicillin | Roth | 6344.1; CAS: 4800-94-6
Gentamicin | Roth | 0233.2; CAS: 1405-41-0
Sodium hypochlorite | Roth | 9062.4; CAS: 7681-52-9
T4 polynucleotide kinase | New England BioLabs | CAT#M0201S
T4 DNA ligase | New England BioLabs | CAT#M0202M
DpnI | New England BioLabs | CAT#R0176L
T4 DNA ligase buffer | New England BioLabs | CAT#B0202S
N-naphthol | Sigma Aldrich | N1000-10G; CAS: 90-15-3
D-glucose | Roth | 6887.2; CAS: 77938-63-7
Laminaribiose β-1-3-(Glc)2 | Megazyme | O-LAM2; CAS: 34980-39-7
Laminaritriose β-1-3-(Glc)3 | Megazyme | O-LAM3; CAS: 3256-04-0
Laminaripentaose β-1-3-(Glc)5 | Megazyme | O-LAM5; CAS: 23743-55-7
Gentiobiose β-1-6-(Glc)2 | Megazyme | O-GENT; CAS: 554-91-6
endo-1,3-β-D-glucanase (barley BGLUII) | Megazyme | E-LAMHV; CAS: 9025-37-0
Chitohexaose | Megazyme | O-CHI6; CAS: 38854-46-5
Cellohexaose | Megazyme | O-CHE; CAS: 2478-35-5
Xyloglucan oligomer (XXXG) | Megazyme | O-X3G4; CAS: 121591-98-8
Laminarin from Eisenia bicyclis | Biosynth | YL02421; CAS: 9008-22-4
Laminarin from Laminaria digitata | Sigma Aldrich | L9634-1G; CAS: 9008-22-4
Elf18 | The Sainsbury Laboratory, United Kingdom (Prof. Dr. Cyril Zipfel) | N/A
EZ-Link Hydrazide-Biotin | Thermo Scientific | CAT#21339
Sodium cyanoborohydride | Sigma Aldrich | 42077-10G; CAS: 25895-60-7
Aniline blue | Sigma Aldrich | 415049-25G; CAS: 666787-07-8
Concanavalin A (ConA) - Alexa Fluor 633 | Invitrogen, Thermo Fisher Scientific | CAT#C21402
Wheat Germ Agglutinin (WGA) - Alexa Fluor 488 | Invitrogen, Thermo Fisher Scientific | CAT#W11261
Avidin | Sigma Aldrich | A9275-5MG; CAS: 1405-69-2
Acetosyringone | Roth | 6003.2; CAS: 2478-38-8
NeutrAvidin agarose resin | Thermo Fisher Scientific | CAT#29200
Blue ink | Pelikan | 301010
Gelrite | Duchefa | G1101; CAS: 71010-52-1
Strep-Tactin Macroprep | IBA Lifesciences GmbH | 2-1505-010
Critical commercial assays
NucleoSpin Gel and PCR Clean-up Kit | Macherey-Nagel | 740609.50
NucleoSpin Plasmid Kit | Macherey-Nagel | 740588.50
Deposited data
Proteomic data | ProteomeXchange Consortium via PRIDE partner repository (Perez-Riverol et al.73) | PXD046129
Experimental models: Organisms/strains
Serendipita indica: DSM11827 | German Collection of Microorganisms and Cell Cultures (DSMZ) | NCBI Taxonomy ID: 1109443
Serendipita vermifera: MAFF305830 | NARO Research Center of Genetic Resources, Japan | NCBI Taxonomy ID: 933852
Bipolaris sorokiniana: ND90Pr | Max Planck Institute for Terrestrial Microbiology, Marburg, Germany (Shadab Nizam) | NCBI Taxonomy ID: 665912
Blumeria hordei: K1 | Hinze et al.74 | NCBI Taxonomy ID: 1283759
Rhizophagus irregularis: DAOM197198 | Symplanta | 00101SP; https://www.symplanta.com/productcatalog.html
Barley: control: Hordeum vulgare (cv. Golden Promise Fast) | Gol et al.42 | N/A
Barley: gbp1 gbp2 #1: Hordeum vulgare (cv. Golden Promise Fast) gbp1-1 gbp2-1 | this paper | N/A
Barley: gbp1 gbp2 #2: Hordeum vulgare (cv. Golden Promise Fast) gbp1-2 gbp2-2/gbp2-3 | this paper | N/A
Nicotiana benthamiana | The Sainsbury Laboratory, United Kingdom (Prof. Dr. Cyril Zipfel) | N/A
Oligonucleotides
Primers for cloning see Table S1 | this paper | N/A
Primers for site-directed mutagenesis see Table S1 | this paper | N/A
Primers for CRISPR/Cas9 gRNA see Table S1 | this paper | N/A
Primers for S. indica colonization assay (qPCR) see Table S1 | Chandrasekar et al.33 | N/A
Primers for S. vermifera colonization assay (qPCR) see Table S1 | Mahdi et al.75 | N/A
Primers for B. sorokiniana colonization assay (qPCR) see Table S1 | Mahdi et al.75 | N/A
Primers for H. vulgare colonization assay (qPCR) see Table S1 | Deshmukh et al.76 | Accession no. M60175
Primers for barley PR10 expression (qPCR) see Table S1 | Schäfer et al.77 | N/A
Recombinant DNA
pXCScpmv-HAStrep | Witte et al.78; Myrach et al.79 | N/A
pXCScpmv-GBP1-HAStrep | This paper | N/A
pXCScpmv-GBP1_E500A-HAStrep | This paper | N/A
pMGE625 | Martin Luther University Halle-Wittenburg, Germany (Prof. Dr. Johannes Stuttmann) | N/A
pMGE626 | Martin Luther University Halle-Wittenburg, Germany (Prof. Dr. Johannes Stuttmann) | N/A
pMGE628 | Martin Luther University Halle-Wittenburg, Germany (Prof. Dr. Johannes Stuttmann) | N/A
pMGE629 | Martin Luther University Halle-Wittenburg, Germany (Prof. Dr. Johannes Stuttmann) | N/A
pMGE599 | Martin Luther University Halle-Wittenburg, Germany (Prof. Dr. Johannes Stuttmann) | N/A
pMP202 | Martin Luther University Halle-Wittenburg, Germany (Prof. Dr. Johannes Stuttmann) | N/A
Software and algorithms
Flexanalysis software (v. 4.0) | Bruker Daltonics | https://www.bruker.com/en.html
CRISPOR web tool (v. 4.97) | Concordet and Haeussler80 | http://crispor.tefor.net/
ImageJ (v. 1.53) | Schneider et al.81 | https://imagej.nih.gov/ij/
SparkControl (v. 2.1) | Tecan | https://lifesciences.tecan.com/multimode-plate-reader?p=tab--3
Scaffold (v. 4) | Proteome Software | https://www.proteomesoftware.com/products/scaffold-5
MSConvert package | ProteoWizard | https://proteowizard.sourceforge.io/download.html
Mascot server (v. 2.3) | Matrix Science | https://www.matrixscience.com/server.html
Other
TECAN SPARK 10 M multiwell plate reader | Tecan | N/A
PD MidiTrap G-10 column | Cytiva | 28918011
TCS SP8 confocal microscope | Leica | https://www.leica-microsystems.com/
AxioStar light microscope | Carl Zeiss | N/A
Silica gel 60 F254 aluminum TLC plate | Merck Millipore | 105554
MALDI-TOF mass spectrometer (rapifleX instrument) | Bruker | https://www.bruker.com/en/products-and-solutions/mass-spectrometry/maldi-tof/rapiflex.html
Reverse phase trap column (Acclaim PepMap, C18 5 μm, 100 μm x 2 cm) | Thermo Scientific | N/A
Analytical column (Acclaim PepMap 100, C18 3 μm, 75 μm x 50 cm) | Thermo Scientific | CAT#164570
Orbitrap Fusion Tribrid mass spectrometer | Thermo Scientific | https://www.thermofisher.com/de/de/home/industrial/mass-spectrometry/liquid-chromatography-mass-spectrometry-lc-ms/lc-ms-systems/orbitrap-lc-ms/orbitrap-tribrid-mass-spectrometers.html#fusion-tribrid
Nanoflow-UHPLC system (UltiMate3000 Dionex) | Thermo Scientific | N/A
PD-10 desalting column | Sigma Aldrich | GE17-0851-01
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment