2022-04-12_anja_stefanski.md

Meeting Anja Stefanski

12.04.2022 - 10:30 - Webex

• sample quality not soo good
• data analysis with proteome discoverer (thermo fisher)
  • maxquant is good, but tricky for newbies
• identification or quantification
  • quantification possible with triplicates

to dos

Dominik

• send back sample list
  • indicate order of fractions (F1-F4)
  • species used

Anja

• runs DA in standard pipeline (proteome discoverer)
  • ricinus proteome / reference from uniprot? If available
  • t-test, fold changes, ratios, normalised abundances for every peptide => plenty of excel tables
  • possible output fasta of identified peptides / proteins?