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Commit 4b2a9932 authored by Dominik Brilhaus's avatar Dominik Brilhaus
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# ricinus_proteome_arc
Legacy data on Ricinus proteome from Nicole Linka and Thomas Wrobel
## setting up this arc
> using arcCommander v0.3.1
```bash
arc init
arc i create -i "Ricinus proteome"
mkdir _NicolesData; touch _NicolesData/.gitkeep
```
## add raw dataset as retrieved from Anja Stefanski via Sciebo (06.04.2022)
### setup assay structure
```bash
arc assay add -s "2012_ricinus_proteome_wrobel" -a "2012_proteome_data_bmfz_stefanski"
```
### run md5s on downloaded data
```bash
md5 ~/Downloads/Daten\ Linka/*.raw > _NicolesData/raw_data_md5s.txt
```
### Add large data to gitignore for now...
```bash
printf "\n*.raw" >> .gitignore
```
### add downloaded data to arc
```bash
mv ~/Downloads/Daten\ Linka/Messliste_Wrobel.xlsx _NicolesData/
mv ~/Downloads/Daten\ Linka/*.raw assays/2012_proteome_data_bmfz_stefanski/dataset
```
### sync arc with GitLab
```bash
arc sync -m "add raw data from bmfz"
```
Legacy data on Ricinus proteome from Nicole Linka and Thomas Wrobel
# setting up this arc
> using arcCommander v0.3.1
```bash
arc init
arc i create -i "Ricinus proteome"
mkdir _NicolesData; touch _NicolesData/.gitkeep
```
## add raw dataset as retrieved from Anja Stefanski via Sciebo (06.04.2022)
### setup assay structure
```bash
arc assay add -s "2012_ricinus_proteome_wrobel" -a "2012_proteome_data_bmfz_stefanski"
```
### run md5s on downloaded data
```bash
md5 ~/Downloads/Daten\ Linka/*.raw > _NicolesData/raw_data_md5s.txt
```
### Add large data to gitignore for now...
```bash
printf "\n*.raw" >> .gitignore
```
### add downloaded data to arc
```bash
mv ~/Downloads/Daten\ Linka/Messliste_Wrobel.xlsx _NicolesData/
mv ~/Downloads/Daten\ Linka/*.raw assays/2012_proteome_data_bmfz_stefanski/dataset
```
### sync arc with GitLab
```bash
arc sync -m "add raw data from bmfz"
```
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