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Commit 0a327b4a authored by Dominik Brilhaus's avatar Dominik Brilhaus
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remove placeholder README for now

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# Please add a valid title for your ArcInvestigation
### Please add a valid description to your ArcInvestigation
## Table of Contents
1. Studies
2. Assays
- [RNAseq_raw_data](#assay--rnaseq_raw_data)
- [FASTQC](#assay--fastqc)
## Graphical overview
```mermaid
---
title: Effects_of_Ppd-H1_and_High_Ambient_Temperatures_in_Barley
---
flowchart TD
classDef investigationStyle fill:#6c7885,color:#2d3e50,fontWeight:bold;
classDef studyStyle fill:#62d4c1,color:#2d3e50,fontWeight:bold;
classDef assayStyle fill:#ffd34d,color:#2d3e50,fontWeight:bold;
classDef processStyle fill:#D46275,color:#2d3e50;
id_0["<no-title>"]
class id_0 investigationStyle;
id_0-->STUDY_id_1
class STUDY_id_1 studyStyle;
subgraph STUDY_id_1[Study: RNAseq_analysis]
end
subgraph ASSAY_id_2[Assay: Salmon_quantification]
end
class ASSAY_id_2 assayStyle;
subgraph ASSAY_id_3[Assay: RNAseq_analysis_of_MSA]
end
class ASSAY_id_3 assayStyle;
subgraph ASSAY_id_4[Assay: RNAseq_raw_data]
id_5[NewTable0]
class id_5 processStyle;
end
class ASSAY_id_4 assayStyle;
subgraph ASSAY_id_6[Assay: RNAseq_analysis_of_leaf]
end
class ASSAY_id_6 assayStyle;
subgraph ASSAY_id_7[Assay: FASTQC]
id_5[NewTable0]
class id_5 processStyle;
end
class ASSAY_id_7 assayStyle;
id_5-->|1|id_5
id_5-->|389|id_8
id_8-->|1|id_5
id_8-->|1|id_8
```
### Additional details
| Meta Data | Description |
| --------- | ----------- |
| Submission Date | tba |
| Public Release Date | tba |
| Study identifiers | RNAseq_analysis |
| Study Count | 1 |
| Assay identifiers | Salmon_quantification , RNAseq_analysis_of_MSA , RNAseq_raw_data , RNAseq_analysis_of_leaf , FASTQC |
| Assay Count | 5 |
## Assay: _RNAseq_raw_data_
### Additional details
| Meta Data | Description |
| --------- | ----------- |
| Measurement Type | RNA-Seq |
| Technology Type | Illumina NovaSeq 6000 |
| Table Count | 1 |
| Table Names | NewTable0 |
| Sample Count | 406 |
| Data File Count | 406 |
| Associated studies | |
### Annotation headers
**Parameters**: [library strategy](http://purl.org/nfdi4plants/ontology/dpbo/DPBO_0000035),[library preparation kit](http://purl.obolibrary.org/obo/GENEPIO_0000085),[library preparation kit version](http://purl.obolibrary.org/obo/GENEPIO_0000149),[adapter sequence](http://purl.obolibrary.org/obo/GENEPIO_0000083),[next generation sequencing instrument model](http://purl.org/nfdi4plants/ontology/dpbo/DPBO_0000040),[base-calling software](http://purl.org/nfdi4plants/ontology/dpbo/DPBO_0000017),[base-calling software version](http://purl.org/nfdi4plants/ontology/dpbo/DPBO_0000018),[base-calling software parameters](http://purl.org/nfdi4plants/ontology/dpbo/DPBO_0000019),[library strand](http://purl.org/nfdi4plants/ontology/dpbo/DPBO_0000020),[Raw data file format](http://purl.org/nfdi4plants/ontology/dpbo/DPBO_0000021)
## Assay: _FASTQC_
### Additional details
| Meta Data | Description |
| --------- | ----------- |
| Technology Type | FASTQC |
| Table Count | 1 |
| Table Names | NewTable0 |
| Sample Count | 840 |
| Data File Count | 0 |
| Associated studies | |
### Annotation headers
**Characteristics**: [Format](https://bioregistry.io/NCIT:C42761)
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