rename assay

1c6646fe · Viktoria Petrova · dc3afc21 · dc3afc21 · dc3afc21 · dc3afc21
Commit 1c6646fe authored 4 weeks ago by Viktoria Petrova
--- a/assays/RNAseq_analysis_of_leaf/isa.assay.xlsx
+++ b/assays/RNAseq_analysis_of_leaf/isa.assay.xlsx
--- a/assays/ThreeDRNAseq/README.md
+++ b/assays/ThreeDRNAseq/README.md
-RNAseq analysis was conducted on the leaf and main shoot apex (MSA) samples separately.
-
-The tables of Count and Transcript per Million (TPM) were obtained using ThreeDRNAseq R package.
-The tables of differentially expressed genes were obtained using EdgeR R package.
-Gene Ontology analysis was performed using the Triticeae-Gene Tribe database (http://wheat.cau.edu.cn/TGT/m15/?navbar=GOEnrichment).
-WCGNA analysis was performed using the WGCNA R package.
--- a/assays/ThreeDRNAseq/dataset/.gitkeep
+++ b/assays/ThreeDRNAseq/dataset/.gitkeep
--- a/assays/ThreeDRNAseq/dataset/Count_leaf/counts_gene_leaf.csv
+++ b/assays/ThreeDRNAseq/dataset/Count_leaf/counts_gene_leaf.csv
--- a/assays/ThreeDRNAseq/dataset/Count_leaf/counts_transcript_leaf.csv
+++ b/assays/ThreeDRNAseq/dataset/Count_leaf/counts_transcript_leaf.csv
--- a/assays/ThreeDRNAseq/dataset/TPM_leaf/TPM_genes_leaf.csv
+++ b/assays/ThreeDRNAseq/dataset/TPM_leaf/TPM_genes_leaf.csv
--- a/assays/ThreeDRNAseq/dataset/TPM_leaf/TPM_transcripts_leaf.csv
+++ b/assays/ThreeDRNAseq/dataset/TPM_leaf/TPM_transcripts_leaf.csv
--- a/assays/ThreeDRNAseq/isa.assay.xlsx
+++ b/assays/ThreeDRNAseq/isa.assay.xlsx
--- a/assays/ThreeDRNAseq/protocols/.gitkeep
+++ b/assays/ThreeDRNAseq/protocols/.gitkeep