replace TAIR10 ref with the one used "back then"

.gitattributes

@@ -4,3 +4,4 @@ _publication/fpls-09-01709.pdf filter=lfs diff=lfs merge=lfs -text
 _publication/Data[[:space:]]Sheet[[:space:]]1.xlsx filter=lfs diff=lfs merge=lfs -text
 studies/arabidopsis-reference/resources/Araport11_genes.201606.cdna.fasta filter=lfs diff=lfs merge=lfs -text
 runs/kallisto_index/out/kallisto_index filter=lfs diff=lfs merge=lfs -text
+studies/arabidopsis-reference/resources/Arabidopsis_thaliana.TAIR10.28.cdna.all.fa filter=lfs diff=lfs merge=lfs -text

studies/arabidopsis-reference/protocols/download-reference.md

+
+# Downloading Arabidopsis TAIR10 fasta
+
+### Download and unzip
+
+```bash
+curl -O ftp://ftp.ensemblgenomes.org/pub/plants/release-28/fasta/arabidopsis_thaliana/cdna/Arabidopsis_thaliana.TAIR10.28.cdna.all.fa.gz
+gunzip Arabidopsis_thaliana.TAIR10.28.cdna.all.fa.gz
+```
+
+### sanity check
+
+count number of genes / gene products
+
+```bash
+grep '>' Arabidopsis_thaliana.TAIR10.28.cdna.all.fa | wc -l
+```
+
+### move
+
+```bash
+mv Arabidopsis_thaliana.TAIR10.28.cdna.all.fa ../resources
+```