Skip to content
Snippets Groups Projects
Select Git revision
  • cqc
  • main default protected
2 results
Blame Permalink
instructions.md 706 B

docker setup

rebuild the image with one final detail so as to match the UID of the host and be able to share files w/o continuous premission trouble

build docker image

sudo docker build --build-arg USERID=$(id -u) -t rnaseqme --rm .

start docker container

Do this from the parent directory of the 'rnaseq-workshop' repository, so that the mounted folder contains the repository

sudo docker run -it --name rnalive --rm --mount type=bind,source="$(pwd)"/rnaseq-workshop,target=/home/zim-gast/rnaseq-workshop rnaseqme:latest

Or for course participants docker run -it --name rnalive --mount type=bind,source="$(pwd)"/rnaseq-workshop,target=/home/zim-gast/rnaseq-workshop rnaseqme:latest