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CEPLAS RNASeq Workshop 2022
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HHU Plant Biochemistry
CEPLAS RNASeq Workshop 2022
Commits
7e69d03b
Commit
7e69d03b
authored
2 years ago
by
Alisandra Denton
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make usernames match
parent
0e6a4ae9
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workflows/rstudiodocker/Dockerfile
+3
-3
3 additions, 3 deletions
workflows/rstudiodocker/Dockerfile
workflows/rstudiodocker/instructions.md
+2
-2
2 additions, 2 deletions
workflows/rstudiodocker/instructions.md
with
5 additions
and
5 deletions
workflows/rstudiodocker/Dockerfile
+
3
−
3
View file @
7e69d03b
FROM
rocker/r-ver:latest
RUN
useradd
--create-home
--shell
/bin/bash
ZIM
-gast
RUN
mkdir
/home/
ZIM
-gast/rnaseq-workshop
RUN
useradd
--create-home
--shell
/bin/bash
zim
-gast
RUN
mkdir
/home/
zim
-gast/rnaseq-workshop
LABEL
org.opencontainers.image.licenses="GPL-2.0-or-later" \
org.opencontainers.image.source="https://github.com/rocker-org/rocker-versioned2" \
...
...
@@ -37,7 +37,7 @@ RUN Rscript -e "devtools::install_github('pachterlab/sleuth')"
EXPOSE
8787
WORKDIR
/home/
ZIM
-gast/rnaseq-workshop
WORKDIR
/home/
zim
-gast/rnaseq-workshop
#CMD ["bash"]
CMD
["/init"]
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workflows/rstudiodocker/instructions.md
+
2
−
2
View file @
7e69d03b
...
...
@@ -3,14 +3,14 @@ sudo docker build -t rstudio --rm .
```
```
sudo docker run --rm -p 8787:8787 -e PASSWORD=rstudio --mount type=bind,source=${PWD}/rnaseq-workshop,target=/home/
ZIM
-gast/rnaseq-workshop rstudio
sudo docker run --rm -p 8787:8787 -e PASSWORD=rstudio --mount type=bind,source=${PWD}/rnaseq-workshop,target=/home/
zim
-gast/rnaseq-workshop rstudio
```
Then go to 'localhost:8787' in the browser on the host machine.
username and password are both 'rstudio'.
once rstudio is open, you will need to run
`setwd('/home/
ZIM
-gast/rnaseq-workshop/')`
once rstudio is open, you will need to run
`setwd('/home/
zim
-gast/rnaseq-workshop/')`
To create tar
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