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Commit f87b1737 authored by Dominik Brilhaus's avatar Dominik Brilhaus
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../hhu_talinum_genome/assays/Brilhaus2015_PE_mRNASeq/dataset/ # Brilhaus2015_PE_mRNASeq
:bulb: Data files listed here are not yet available via git
```bash
./dataset/
├── [790M] DB_173_reC3_ED_GAGTGG_L001_R1_001.fastq.gz ├── [790M] DB_173_reC3_ED_GAGTGG_L001_R1_001.fastq.gz
├── [781M] DB_173_reC3_ED_GAGTGG_L001_R2_001.fastq.gz ├── [781M] DB_173_reC3_ED_GAGTGG_L001_R2_001.fastq.gz
├── [1016M] DB_201_reC3_EN_CGATGT_L001_R1_001.fastq.gz ├── [1016M] DB_201_reC3_EN_CGATGT_L001_R1_001.fastq.gz
...@@ -13,3 +18,4 @@ ...@@ -13,3 +18,4 @@
└── [907M] DB_77_CAM_MN_GCCAAT_L001_R2_001.fastq.gz └── [907M] DB_77_CAM_MN_GCCAAT_L001_R2_001.fastq.gz
10G used in 0 directories, 12 files 10G used in 0 directories, 12 files
```
\ No newline at end of file
../hhu_talinum_genome/assays/Brilhaus2015_SE_mRNASeq/dataset/ # Brilhaus2015_SE_mRNASeq
:bulb: Data files listed here are not yet available via git
```bash
./dataset/
├── [1.6G] DB_103_CAMMD_AGTCAA_L001_R1_001.fastq.gz ├── [1.6G] DB_103_CAMMD_AGTCAA_L001_R1_001.fastq.gz
├── [1.8G] DB_111_CAMED_ACAGTG_L002_R1_001.fastq.gz ├── [1.8G] DB_111_CAMED_ACAGTG_L002_R1_001.fastq.gz
├── [1.9G] DB_113_CAMED_GCCAAT_L002_R1_001.fastq.gz ├── [1.9G] DB_113_CAMED_GCCAAT_L002_R1_001.fastq.gz
...@@ -25,3 +30,4 @@ ...@@ -25,3 +30,4 @@
└── [1.8G] DB_99_CAMMD_CTTGTA_L001_R1_001.fastq.gz └── [1.8G] DB_99_CAMMD_CTTGTA_L001_R1_001.fastq.gz
40G used in 0 directories, 24 files 40G used in 0 directories, 24 files
```
\ No newline at end of file
# Maleckova2018_aba_mRNASeq # Maleckova2018_aba_mRNASeq
## Accession numbers :bulb: Data files listed here are not yet available via git
The read data as well as processed files are deposited at the National Center for Biotechnology Information Gene Expression Omnibus under accession number GSE116590 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE116590).../hhu_talinum_genome/assays/Maleckova2018_aba_mRNASeq/dataset/ ```bash
./dataset/
├── [2.2G] 311_S73_L007_R1_001.fastq.gz ├── [2.2G] 311_S73_L007_R1_001.fastq.gz
├── [2.0G] 312_S74_L007_R1_001.fastq.gz ├── [2.0G] 312_S74_L007_R1_001.fastq.gz
├── [2.3G] 313_S75_L007_R1_001.fastq.gz ├── [2.3G] 313_S75_L007_R1_001.fastq.gz
...@@ -29,3 +30,4 @@ The read data as well as processed files are deposited at the Nation ...@@ -29,3 +30,4 @@ The read data as well as processed files are deposited at the Nation
└── [1.9G] 334_S96_L008_R1_001.fastq.gz └── [1.9G] 334_S96_L008_R1_001.fastq.gz
50G used in 0 directories, 24 files 50G used in 0 directories, 24 files
```
\ No newline at end of file
# Maleckova2019_A_Oxford_Nanopore # Maleckova2019_A_Oxford_Nanopore
:bulb: Data files listed here are not yet available via git due to LFS issues (March 14 2023) :bulb: Data files listed here are not yet available via git
```bash ```bash
assays/Maleckova2019_A_Oxford_Nanopore/dataset/ ./dataset/
├── [112G] 261-NGS-041019-0 ├── [112G] 261-NGS-041019-0
│ ├── [ 31G] Talinum1.zip │ ├── [ 31G] Talinum1.zip
│ ├── [ 25G] Talinum2.zip │ ├── [ 25G] Talinum2.zip
......
# Maleckova2019_B_Illumina_HiSeq_DNASeq # Maleckova2019_B_Illumina_HiSeq_DNASeq
:bulb: Data files listed here are not yet available via git due to LFS issues (March 14 2023) :bulb: Data files listed here are not yet available via git
```bash ```bash
assays/Maleckova2019_B_Illumina_HiSeq_DNASeq/dataset/ ./dataset/
├── [692K] 14-7_S1_L008_R1_001_fastqc.html ├── [692K] 14-7_S1_L008_R1_001_fastqc.html
├── [423K] 14-7_S1_L008_R1_001_fastqc.zip ├── [423K] 14-7_S1_L008_R1_001_fastqc.zip
├── [ 25G] 14-7_S1_L008_R1_001.fastq.gz ├── [ 25G] 14-7_S1_L008_R1_001.fastq.gz
......
# Maleckova2019_C_PacBio_Isoseq # Maleckova2019_C_PacBio_Isoseq
:bulb: Data files listed here are not yet available via git due to LFS issues (March 14 2023) :bulb: Data files listed here are not yet available via git
```bash ```bash
assays/Maleckova2019_C_PacBio_Isoseq/dataset/ ./dataset/
└── [698G] 160-NGS-050619_IsoSeq-TT └── [698G] 160-NGS-050619_IsoSeq-TT
├── [196G] Cell1 ├── [196G] Cell1
│ └── [196G] 1_D06 │ └── [196G] 1_D06
......
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