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Commit a6603bd5 authored by Dominik Brilhaus's avatar Dominik Brilhaus
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Merge branch 'cwl-readme' into 'main'

add readme with cwl example

See merge request !4
parents 73f40e01 e4780512
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# CWL examples
:bulb: Requires installation of a CWL runner and docker
checkout CWL guides in the [DataPLANT Knowledge Base](https://nfdi4plants.org/nfdi4plants.knowledgebase/docs/guides/ComputationalWorkflows/index.html)
All three workflow examples below (re)create the file [fsResult1/result.csv](fsResult1/result.csv).
## with a docker container
```bash
cd runs/fsResult1
cwltool ../../workflows/FixedScript/FSharpArcCapsule.cwl ../FSharpArcCapsule.yml
```
## With a fixed script in a mounted arc
```bash
cd runs/fsResult1
cwltool ../../workflows/ARCMount/FSharpArcCapsule.cwl ../FSharpArcCapsule.yml
```
## Within an ARC with a devcontainer
```bash
cd runs/fsResult1
cwltool ../../workflows/Devcontainer/FSharpArcCapsule.cwl ../FSharpArcCapsule.yml
```
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