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add readme with cwl example

Merged Dominik Brilhaus requested to merge cwl-readme into main

@caroott

I was not sure about the relative paths. Could you extend and maybe add instructions for the other CWL examples?

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  • Hey, the relative paths are correct. The other examples have a similar behavior, they just differ in the cwl files. They are functionally executed in the same way. So it would be

    cwltool ../../workflows/ARCMount/FSharpArcCapsule.cwl ../FSharpArcCapsule.yml

    and

    cwltool ../../workflows/Devcontainer/FSharpArcCapsule.cwl ../FSharpArcCapsule.yml

    for the other two examples

  • Ah right, I was confused by arc:name: "./arc/runs/fsResult1/result.csv" hard-coded in the yml, but I guess that's just metadata. And until now, I did not realize that the same .yml is used for all three examples, which makes sense but might confuse other users exploring the examples as well.

  • added 1 commit

    • e4780512 - add other two cwl examples to readme

    Compare with previous version

  • Yes, that part is just metadata and doesn't influence the execution. I understand why the yml can be confusing as well. Since the examples are really similar, they share most of the parameters. Not all parameters are needed for all workflows, but since they are named, only the required ones are picked. But they could be easily separated in 3 different ymls if that helps with understanding the examples.

  • mentioned in commit a6603bd5

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