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Update cwl and yml files

Merged Caroline Ott requested to merge spec-update into main

This merge request updates the file locations for the run.cwl and run.yml in accordance to the ARC specification. It also updates the naming for the main workflows and adds performer metadata to the run.yml.

I also chose a workflow instead of a command line tool for the run.cwl, since in my opionion it is cleaner than running a command inside the run.cwl that just executes the workflow.cwl with the run.yml. The association with the run.yml is given by the location in the same folder. Let me know, what you think about this solution. The corresponding discussion can be found here

Merge request reports

Merge request pipeline #5883 passed

Merge request pipeline passed for 561948e1

Merged by Heinrich Lukas WeilHeinrich Lukas Weil 4 months ago (Nov 22, 2024 12:18pm UTC)

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Pipeline #5967 passed

Pipeline passed for 61577149 on main

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