CWL examples

💡 Requires installation of a CWL runner and docker
→ checkout CWL guides in the DataPLANT Knowledge Base

All three workflow examples below (re)create the file */result.csv.

with a docker container and a fixed script

cd runs/FixedScriptResult
cwltool run.cwl run.yml

With a fixed script in a mounted arc

cd runs/ARCMountResult
cwltool run.cwl run.yml

Within an ARC with a devcontainer

cd runs/DevContainerResult
cwltool run.cwl run.yml