changed paths to ARC structure in code and readme files

e1962341 · Tom Winkler · b6981cda · e1962341 · e1962341 · e1962341
Commit e1962341 authored 7 months ago by Tom Winkler
--- a/.gitattributes
+++ b/.gitattributes
+assays/isoform_sequencing/dataset/reads/375-4.merged.bam filter=lfs diff=lfs merge=lfs -text
+assays/isoform_sequencing/dataset/reads/375-5.merged.bam filter=lfs diff=lfs merge=lfs -text
+assays/isoform_sequencing/dataset/reads/375-6.merged.bam filter=lfs diff=lfs merge=lfs -text
+studies/additional_data/resources/reference_genomes/Ahypochondriacus/assembly/Ahypochondriacus_459_v2.0.softmasked.nospace.underscore.fa filter=lfs diff=lfs merge=lfs -text
+assays/isoform_sequencing/dataset/reads/119_1_CCS.bam filter=lfs diff=lfs merge=lfs -text
+assays/isoform_sequencing/dataset/reads/375-1.merged.bam filter=lfs diff=lfs merge=lfs -text
+assays/isoform_sequencing/dataset/reads/375-2.merged.bam filter=lfs diff=lfs merge=lfs -text
+assays/isoform_sequencing/dataset/reads/375-3.merged.bam filter=lfs diff=lfs merge=lfs -text
--- a/assays/BSA_RNAseq/isa.assay.xlsx
+++ b/assays/BSA_RNAseq/isa.assay.xlsx
--- a/assays/BSA_WGS/isa.assay.xlsx
+++ b/assays/BSA_WGS/isa.assay.xlsx
--- a/assays/betalain_LCMS_quantification/isa.assay.xlsx
+++ b/assays/betalain_LCMS_quantification/isa.assay.xlsx
--- a/assays/betalain_photometric_quantification/isa.assay.xlsx
+++ b/assays/betalain_photometric_quantification/isa.assay.xlsx
--- a/assays/isoform_sequencing/dataset/reads/119_1_CCS.bam
+++ b/assays/isoform_sequencing/dataset/reads/119_1_CCS.bam
--- a/assays/isoform_sequencing/dataset/reads/375-1.merged.bam
+++ b/assays/isoform_sequencing/dataset/reads/375-1.merged.bam
--- a/assays/isoform_sequencing/dataset/reads/375-2.merged.bam
+++ b/assays/isoform_sequencing/dataset/reads/375-2.merged.bam
--- a/assays/isoform_sequencing/dataset/reads/375-3.merged.bam
+++ b/assays/isoform_sequencing/dataset/reads/375-3.merged.bam
--- a/assays/isoform_sequencing/dataset/reads/375-4.merged.bam
+++ b/assays/isoform_sequencing/dataset/reads/375-4.merged.bam
--- a/assays/isoform_sequencing/dataset/reads/375-5.merged.bam
+++ b/assays/isoform_sequencing/dataset/reads/375-5.merged.bam
--- a/assays/isoform_sequencing/dataset/reads/375-6.merged.bam
+++ b/assays/isoform_sequencing/dataset/reads/375-6.merged.bam
--- a/assays/isoform_sequencing/isa.assay.xlsx
+++ b/assays/isoform_sequencing/isa.assay.xlsx
--- a/isa.investigation.xlsx
+++ b/isa.investigation.xlsx
--- a/studies/BSA_parent_betalain_quant/isa.study.xlsx
+++ b/studies/BSA_parent_betalain_quant/isa.study.xlsx
--- a/studies/Bulk_segregant_analysis/isa.study.xlsx
+++ b/studies/Bulk_segregant_analysis/isa.study.xlsx
--- a/studies/additional_data/isa.study.xlsx
+++ b/studies/additional_data/isa.study.xlsx
--- a/studies/additional_data/resources/reference_genomes/Ahypochondriacus/assembly/Ahypochondriacus_459_v2.0.softmasked.nospace.underscore.fa
+++ b/studies/additional_data/resources/reference_genomes/Ahypochondriacus/assembly/Ahypochondriacus_459_v2.0.softmasked.nospace.underscore.fa
--- a/studies/additional_data/resources/reference_genomes/Ahypochondriacus/assembly/Ahypochondriacus_459_v2.0.softmasked.nospace.underscore.fa.fai
+++ b/studies/additional_data/resources/reference_genomes/Ahypochondriacus/assembly/Ahypochondriacus_459_v2.0.softmasked.nospace.underscore.fa.fai
--- a/studies/isoform_sequencing/isa.study.xlsx
+++ b/studies/isoform_sequencing/isa.study.xlsx