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Missing Transcriptomics raw data

3 of 90 transcriptomics samples are missing on SRA.

The remaining 87 were downloaded, zipped and uploaded to the respective ARC assay using:

  • command line tool: sratools
  • dir: sratoolkit.3.0.0-win64/bin
  • command: .\prefetch SRR1548xxxx ; .\fasterq-dump -O .\SRR1548xxxx SRR1548xxxx -p

The missing files were reported to Erin and the SRA office:

  • recovery_24h_35C_C (SRX11781333)
  • heat_0.5h_40C_A (SRX11781343)
  • heat_16h_40C_C (SRX11781360)
Edited by Benedikt Venn