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David Zimmer
TurboIDSampleArc
Commits
0f2305d6
Commit
0f2305d6
authored
1 year ago
by
Heinrich Lukas Weil
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update process parameters in annotation of TurbiIDSampleArc.cwl
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df345c47
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workflows/EvalTurboID/TurboIDSampleArc.cwl
+43
-28
43 additions, 28 deletions
workflows/EvalTurboID/TurboIDSampleArc.cwl
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28 deletions
workflows/EvalTurboID/TurboIDSampleArc.cwl
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28
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0f2305d6
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@@ -36,20 +36,11 @@ outputs:
glob: $(runtime.outdir)/$(inputs.runID)
arc:has measurement type:
- class: arc:measurement type
arc:term accession: "http://purl.obolibrary.org/obo/OMIT_0023015"
arc:term source REF: "OMIT"
arc:annotation value: "Proteomics"
arc:has technology type:
- class: arc:technology type
arc:term accession: "http://purl.obolibrary.org/obo/OMIT_0013943"
arc:term source REF: "OMIT"
arc:annotation value: "Mass Spectrometry"
arc:annotation value: "Docker Container"
arc:technology platform:
SCIEX
arc:technology platform:
".NET"
arc:performer:
- class: arc:Person
...
...
@@ -64,7 +55,7 @@ arc:performer:
arc:has process sequence:
- class: arc:process sequence
arc:name: "
MassSpectrometry
"
arc:name: "
TurboID
"
arc:has input:
- class: arc:sample
arc:name: "PR135_01"
...
...
@@ -81,29 +72,53 @@ arc:has process sequence:
- class: arc:protocol parameter
arc:has parameter name:
- class: arc:parameter name
arc:term accession: "http://purl.obolibrary.org/obo/PATO_0000146"
arc:term source REF: "PATO"
arc:annotation value: "temperature"
arc:has unit:
- class: arc:unit
arc:term accession: "http://purl.obolibrary.org/obo/UO_0000027"
arc:term source REF: "UO"
arc:annotation value: "degree Celsius"
arc:value: 35
arc:term accession: "http://edamontology.org/operation_0004"
arc:term source REF: "EMBRACE"
arc:annotation value: "Operation"
arc:value:
- class: arc:ontology annotation
arc:term accession: "http://edamontology.org/operation_0362"
arc:term source REF: "EMBRACE"
arc:annotation value: "Genome annotation"
- class: arc:process parameter value
arc:has parameter:
- class: arc:protocol parameter
arc:has parameter name:
- class: arc:parameter name
arc:term accession: "http://
purl.obolibrary.org/obo/OBI_0000615
"
arc:term source REF: "
OBI
"
arc:annotation value: "
protein expression profiling assay
"
arc:term accession: "http://
edamontology.org/operation_0004
"
arc:term source REF: "
EMBRACE
"
arc:annotation value: "
Operation
"
arc:value:
- class: arc:ontology annotation
arc:term accession: "http://purl.obolibrary.org/obo/BAO_0010027"
arc:term source REF: "BAO"
arc:annotation value: "shotgun MS protein profiling assay"
arc:term accession: "http://edamontology.org/operation_3435"
arc:term source REF: "EMBRACE"
arc:annotation value: "Standardisation and normalisation"
- class: arc:process parameter value
arc:has parameter:
- class: arc:protocol parameter
arc:has parameter name:
- class: arc:parameter name
arc:term accession: "http://edamontology.org/operation_0004"
arc:term source REF: "EMBRACE"
arc:annotation value: "Operation"
arc:value:
- class: arc:ontology annotation
arc:term accession: "http://edamontology.org/operation_3557"
arc:term source REF: "EMBRACE"
arc:annotation value: "Imputation"
- class: arc:process parameter value
arc:has parameter:
- class: arc:protocol parameter
arc:has parameter name:
- class: arc:parameter name
arc:term accession: "http://purl.obolibrary.org/obo/OBCS_0000001"
arc:term source REF: "OBCS"
arc:annotation value: "statistical data analysis"
arc:value:
- class: arc:ontology annotation
arc:term accession: "http://purl.obolibrary.org/obo/OBCS_0000141"
arc:term source REF: "OBCS"
arc:annotation value: "significance analysis of microarrays"
$namespaces:
arc: https://github.com/nfdi4plants/ARC_ontology
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