Skip to content
Snippets Groups Projects
Commit 0f2305d6 authored by Heinrich Lukas Weil's avatar Heinrich Lukas Weil
Browse files

update process parameters in annotation of TurbiIDSampleArc.cwl

parent df345c47
No related branches found
No related tags found
1 merge request!1Cwl Descriptions
......@@ -36,20 +36,11 @@ outputs:
glob: $(runtime.outdir)/$(inputs.runID)
arc:has measurement type:
- class: arc:measurement type
arc:term accession: "http://purl.obolibrary.org/obo/OMIT_0023015"
arc:term source REF: "OMIT"
arc:annotation value: "Proteomics"
arc:has technology type:
- class: arc:technology type
arc:term accession: "http://purl.obolibrary.org/obo/OMIT_0013943"
arc:term source REF: "OMIT"
arc:annotation value: "Mass Spectrometry"
arc:annotation value: "Docker Container"
arc:technology platform: SCIEX
arc:technology platform: ".NET"
arc:performer:
- class: arc:Person
......@@ -64,7 +55,7 @@ arc:performer:
arc:has process sequence:
- class: arc:process sequence
arc:name: "MassSpectrometry"
arc:name: "TurboID"
arc:has input:
- class: arc:sample
arc:name: "PR135_01"
......@@ -81,29 +72,53 @@ arc:has process sequence:
- class: arc:protocol parameter
arc:has parameter name:
- class: arc:parameter name
arc:term accession: "http://purl.obolibrary.org/obo/PATO_0000146"
arc:term source REF: "PATO"
arc:annotation value: "temperature"
arc:has unit:
- class: arc:unit
arc:term accession: "http://purl.obolibrary.org/obo/UO_0000027"
arc:term source REF: "UO"
arc:annotation value: "degree Celsius"
arc:value: 35
arc:term accession: "http://edamontology.org/operation_0004"
arc:term source REF: "EMBRACE"
arc:annotation value: "Operation"
arc:value:
- class: arc:ontology annotation
arc:term accession: "http://edamontology.org/operation_0362"
arc:term source REF: "EMBRACE"
arc:annotation value: "Genome annotation"
- class: arc:process parameter value
arc:has parameter:
- class: arc:protocol parameter
arc:has parameter name:
- class: arc:parameter name
arc:term accession: "http://purl.obolibrary.org/obo/OBI_0000615"
arc:term source REF: "OBI"
arc:annotation value: "protein expression profiling assay"
arc:term accession: "http://edamontology.org/operation_0004"
arc:term source REF: "EMBRACE"
arc:annotation value: "Operation"
arc:value:
- class: arc:ontology annotation
arc:term accession: "http://purl.obolibrary.org/obo/BAO_0010027"
arc:term source REF: "BAO"
arc:annotation value: "shotgun MS protein profiling assay"
arc:term accession: "http://edamontology.org/operation_3435"
arc:term source REF: "EMBRACE"
arc:annotation value: "Standardisation and normalisation"
- class: arc:process parameter value
arc:has parameter:
- class: arc:protocol parameter
arc:has parameter name:
- class: arc:parameter name
arc:term accession: "http://edamontology.org/operation_0004"
arc:term source REF: "EMBRACE"
arc:annotation value: "Operation"
arc:value:
- class: arc:ontology annotation
arc:term accession: "http://edamontology.org/operation_3557"
arc:term source REF: "EMBRACE"
arc:annotation value: "Imputation"
- class: arc:process parameter value
arc:has parameter:
- class: arc:protocol parameter
arc:has parameter name:
- class: arc:parameter name
arc:term accession: "http://purl.obolibrary.org/obo/OBCS_0000001"
arc:term source REF: "OBCS"
arc:annotation value: "statistical data analysis"
arc:value:
- class: arc:ontology annotation
arc:term accession: "http://purl.obolibrary.org/obo/OBCS_0000141"
arc:term source REF: "OBCS"
arc:annotation value: "significance analysis of microarrays"
$namespaces:
arc: https://github.com/nfdi4plants/ARC_ontology
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment