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Commit 0f2305d6 authored by Heinrich Lukas Weil's avatar Heinrich Lukas Weil
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update process parameters in annotation of TurbiIDSampleArc.cwl

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1 merge request!1Cwl Descriptions
This commit is part of merge request !1. Comments created here will be created in the context of that merge request.
...@@ -36,20 +36,11 @@ outputs: ...@@ -36,20 +36,11 @@ outputs:
glob: $(runtime.outdir)/$(inputs.runID) glob: $(runtime.outdir)/$(inputs.runID)
arc:has measurement type:
- class: arc:measurement type
arc:term accession: "http://purl.obolibrary.org/obo/OMIT_0023015"
arc:term source REF: "OMIT"
arc:annotation value: "Proteomics"
arc:has technology type: arc:has technology type:
- class: arc:technology type - class: arc:technology type
arc:term accession: "http://purl.obolibrary.org/obo/OMIT_0013943" arc:annotation value: "Docker Container"
arc:term source REF: "OMIT"
arc:annotation value: "Mass Spectrometry"
arc:technology platform: SCIEX arc:technology platform: ".NET"
arc:performer: arc:performer:
- class: arc:Person - class: arc:Person
...@@ -64,7 +55,7 @@ arc:performer: ...@@ -64,7 +55,7 @@ arc:performer:
arc:has process sequence: arc:has process sequence:
- class: arc:process sequence - class: arc:process sequence
arc:name: "MassSpectrometry" arc:name: "TurboID"
arc:has input: arc:has input:
- class: arc:sample - class: arc:sample
arc:name: "PR135_01" arc:name: "PR135_01"
...@@ -81,29 +72,53 @@ arc:has process sequence: ...@@ -81,29 +72,53 @@ arc:has process sequence:
- class: arc:protocol parameter - class: arc:protocol parameter
arc:has parameter name: arc:has parameter name:
- class: arc:parameter name - class: arc:parameter name
arc:term accession: "http://purl.obolibrary.org/obo/PATO_0000146" arc:term accession: "http://edamontology.org/operation_0004"
arc:term source REF: "PATO" arc:term source REF: "EMBRACE"
arc:annotation value: "temperature" arc:annotation value: "Operation"
arc:has unit: arc:value:
- class: arc:unit - class: arc:ontology annotation
arc:term accession: "http://purl.obolibrary.org/obo/UO_0000027" arc:term accession: "http://edamontology.org/operation_0362"
arc:term source REF: "UO" arc:term source REF: "EMBRACE"
arc:annotation value: "degree Celsius" arc:annotation value: "Genome annotation"
arc:value: 35
- class: arc:process parameter value - class: arc:process parameter value
arc:has parameter: arc:has parameter:
- class: arc:protocol parameter - class: arc:protocol parameter
arc:has parameter name: arc:has parameter name:
- class: arc:parameter name - class: arc:parameter name
arc:term accession: "http://purl.obolibrary.org/obo/OBI_0000615" arc:term accession: "http://edamontology.org/operation_0004"
arc:term source REF: "OBI" arc:term source REF: "EMBRACE"
arc:annotation value: "protein expression profiling assay" arc:annotation value: "Operation"
arc:value: arc:value:
- class: arc:ontology annotation - class: arc:ontology annotation
arc:term accession: "http://purl.obolibrary.org/obo/BAO_0010027" arc:term accession: "http://edamontology.org/operation_3435"
arc:term source REF: "BAO" arc:term source REF: "EMBRACE"
arc:annotation value: "shotgun MS protein profiling assay" arc:annotation value: "Standardisation and normalisation"
- class: arc:process parameter value
arc:has parameter:
- class: arc:protocol parameter
arc:has parameter name:
- class: arc:parameter name
arc:term accession: "http://edamontology.org/operation_0004"
arc:term source REF: "EMBRACE"
arc:annotation value: "Operation"
arc:value:
- class: arc:ontology annotation
arc:term accession: "http://edamontology.org/operation_3557"
arc:term source REF: "EMBRACE"
arc:annotation value: "Imputation"
- class: arc:process parameter value
arc:has parameter:
- class: arc:protocol parameter
arc:has parameter name:
- class: arc:parameter name
arc:term accession: "http://purl.obolibrary.org/obo/OBCS_0000001"
arc:term source REF: "OBCS"
arc:annotation value: "statistical data analysis"
arc:value:
- class: arc:ontology annotation
arc:term accession: "http://purl.obolibrary.org/obo/OBCS_0000141"
arc:term source REF: "OBCS"
arc:annotation value: "significance analysis of microarrays"
$namespaces: $namespaces:
arc: https://github.com/nfdi4plants/ARC_ontology arc: https://github.com/nfdi4plants/ARC_ontology
......
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