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Commit e6a83e28 authored by Jonathan Ott's avatar Jonathan Ott
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add cwl compatible version and workflow

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1 merge request!1Cwl Descriptions
arcDirectory:
class: Directory
path: ../
mappingFile:
class: File
path: ../workflows/EvalTurboID/scripts/chlamy_jgi55.txt
scriptFile:
class: File
path: ../workflows/EvalTurboID/EvalTurboID.fsx
input:
class: File
path: ../assays/MSEval/dataset/TEF_PSBQ_LON_MS264DDAfs_combined_protein.tsv
runID: test
This diff is collapsed.
cwlVersion: v1.2
class: CommandLineTool
hints:
DockerRequirement:
dockerPull: mcr.microsoft.com/dotnet/sdk:7.0
requirements:
# - class: InlineJavascriptRequirement
# - class: InitialWorkDirRequirement
# listing:
# - entry: $(inputs.scriptDirectory)
# writable: true
- class: EnvVarRequirement
envDef:
- envName: DOTNET_NOLOGO
envValue: "true"
- class: NetworkAccess
networkAccess: true
baseCommand: [dotnet, fsi]
inputs:
scriptFile:
type: File
inputBinding:
position: 1
input:
type: File
inputBinding:
position: 2
prefix: -i
mappingFile:
type: File
inputBinding:
position: 3
prefix: -m
arcDirectory:
type: Directory
inputBinding:
position: 4
prefix: -a
runID:
type: string
inputBinding:
position: 5
prefix: -id
outputs:
output:
type: Directory
outputBinding:
glob: $(runtime.outdir)/$(inputs.runID)
\ No newline at end of file
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