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Commit 5db51ec2 authored by Dominik Brilhaus's avatar Dominik Brilhaus
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fix mermaid

parent 7943aba7
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......@@ -24,25 +24,20 @@ Briefly, every data analysis step (`runs`) is described with a `run.cwl` documen
```
```mermaid
%%{ init: {"flowchart": { "wrappingWidth": "10000" }}}%%
flowchart TD
workflowcwl --o runcwl
workflowcwl --- runcwl
subgraph r["runs/fastqc/"]
runcwl@{ shape: doc, label: "run.cwl" }
runyml@{ shape: doc, label: "run.yml" }
runcwl(("run.cwl"))
runyml(("run.yml"))
end
i[input: DB_097_CAMMD_CAGATC_L001_R1_001.fastq.gz] --o runyml
r --> o[output: DB_097_CAMMD_CAGATC_L001_R1_001_fastqc.html]
i[input: DB_097_CAMMD_CAGATC_L001_R1_001.fastq.gz] --- runyml
r ---> o[output: DB_097_CAMMD_CAGATC_L001_R1_001_fastqc.html]
subgraph "workflows/fastqc"
workflowcwl@{ shape: doc, label: "workflow.cwl" }
workflowcwl(("workflow.cwl"))
end
```
## Setup and dependencies
Again, for details check the docs linked above.
......
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