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Commit 7c076ffe authored by Dominik Brilhaus's avatar Dominik Brilhaus
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1 merge request!4fix docker
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Stage: arc_json
    Stage: quality_report_generator
      Stage: quality_report
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        workflows/deseq2/README.md
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        ...@@ -10,12 +10,12 @@ Workflow used for **differential gene expression analysis** ...@@ -10,12 +10,12 @@ Workflow used for **differential gene expression analysis**
        - https://bioconductor.org/packages/release/bioc/vignettes/tximport/inst/doc/tximport.html#kallisto - https://bioconductor.org/packages/release/bioc/vignettes/tximport/inst/doc/tximport.html#kallisto
        ## Run pure script (to test)
        ## Run pure script
        ```bash ```bash
        RScript deseq2.R "../../runs/kallisto/kallisto_results" "../../runs/merged_isa_metadata/out/merged_isa.tsv" "Source.Name" "Factor..Photosynthesis.mode." RScript deseq2.R "../../runs/kallisto/kallisto_results" "../../runs/merged_isa_metadata/out/merged_isa.tsv" "Source.Name" "Factor..Photosynthesis.mode."
        ``` ```
        ## Run CWL ## Run CWL-wrapped script
        see [runs/deseq2-run](../../runs/deseq2-run)
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