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Commit b300e364 authored by Dominik Brilhaus's avatar Dominik Brilhaus
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Update README.md

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......@@ -25,82 +25,82 @@ style assays/GCqTOF_targets fill:#ffc000
subgraph studies/TalinumFacultativeCAM
DB_097 --[plant_material.md]--> CAM_01
DB_099 --[plant_material.md]--> CAM_02
DB_103 --[plant_material.md]--> CAM_03
DB_161 --[plant_material.md]--> reC3_01
DB_163 --[plant_material.md]--> reC3_02
DB_165 --[plant_material.md]--> reC3_03
DB_097 --plant_material.md--> CAM_01
DB_099 --plant_material.md--> CAM_02
DB_103 --plant_material.md--> CAM_03
DB_161 --plant_material.md--> reC3_01
DB_163 --plant_material.md--> reC3_02
DB_165 --plant_material.md--> reC3_03
end
subgraph assays/Talinum_RNASeq_minimal
CAM_01 --[rna_extraction.md]--> CAM_01_ext
CAM_02 --[rna_extraction.md]--> CAM_02_ext
CAM_03 --[rna_extraction.md]--> CAM_03_ext
reC3_01 --[rna_extraction.md]--> reC3_01_ext
reC3_02 --[rna_extraction.md]--> reC3_02_ext
reC3_03 --[rna_extraction.md]--> reC3_03_ext
CAM_01_ext --[illumina.md]--> DB_097_CAMMD_CAGATC_L001_R1_001.fastq.gz
CAM_02_ext --[illumina.md]--> DB_099_CAMMD_CTTGTA_L001_R1_001.fastq.gz
CAM_03_ext --[illumina.md]--> DB_103_CAMMD_AGTCAA_L001_R1_001.fastq.gz
reC3_01_ext --[illumina.md]--> DB_161_reC3MD_GTCCGC_L001_R1_001.fastq.gz
reC3_02_ext --[illumina.md]--> DB_163_reC3MD_GTGAAA_L001_R1_001.fastq.gz
reC3_03_ext --[illumina.md]--> DB_165_re-C3MD_GTGAAA_L002_R1_001.fastq.gz
CAM_01 --rna_extraction.md--> CAM_01_ext
CAM_02 --rna_extraction.md--> CAM_02_ext
CAM_03 --rna_extraction.md--> CAM_03_ext
reC3_01 --rna_extraction.md--> reC3_01_ext
reC3_02 --rna_extraction.md--> reC3_02_ext
reC3_03 --rna_extraction.md--> reC3_03_ext
CAM_01_ext --illumina.md--> DB_097_CAMMD_CAGATC_L001_R1_001.fastq.gz
CAM_02_ext --illumina.md--> DB_099_CAMMD_CTTGTA_L001_R1_001.fastq.gz
CAM_03_ext --illumina.md--> DB_103_CAMMD_AGTCAA_L001_R1_001.fastq.gz
reC3_01_ext --illumina.md--> DB_161_reC3MD_GTCCGC_L001_R1_001.fastq.gz
reC3_02_ext --illumina.md--> DB_163_reC3MD_GTGAAA_L001_R1_001.fastq.gz
reC3_03_ext --illumina.md--> DB_165_re-C3MD_GTGAAA_L002_R1_001.fastq.gz
end
subgraph assays/GCqTOF_targets
CAM_01 --[metabolite_extraction.md]--> DB23
CAM_02 --[metabolite_extraction.md]--> DB24
CAM_03 --[metabolite_extraction.md]--> DB26
reC3_01 --[metabolite_extraction.md]--> DB39
reC3_02 --[metabolite_extraction.md]--> DB40
reC3_03 --[metabolite_extraction.md]--> DB41
Std.Mix5µM --[gas_chromatography.md]--> 150112_03
Std.Mix5µM --[gas_chromatography.md]--> 150112_04
blank1 --[gas_chromatography.md]--> 150112_15
blank1 --[gas_chromatography.md]--> 150112_16
DB23 --[gas_chromatography.md]--> 150112_55
DB23 --[gas_chromatography.md]--> 150112_56
DB24 --[gas_chromatography.md]--> 150112_61
DB24 --[gas_chromatography.md]--> 150112_62
DB26 --[gas_chromatography.md]--> 150112_65
DB26 --[gas_chromatography.md]--> 150112_66
Std.Mix5µM --[gas_chromatography.md]--> 150115_03
Std.Mix5µM --[gas_chromatography.md]--> 150115_04
DB39 --[gas_chromatography.md]--> 150115_11
DB39 --[gas_chromatography.md]--> 150115_12
DB40 --[gas_chromatography.md]--> 150115_13
DB40 --[gas_chromatography.md]--> 150115_14
DB41 --[gas_chromatography.md]--> 150115_15
DB41 --[gas_chromatography.md]--> 150115_16
blank2 --[gas_chromatography.md]--> 150115_25
blank2 --[gas_chromatography.md]--> 150115_26
150112_03 --[mass_spec.md]--> 150112_03.D
150112_04 --[mass_spec.md]--> 150112_04.D
150112_15 --[mass_spec.md]--> 150112_15.D
150112_16 --[mass_spec.md]--> 150112_16.D
150112_55 --[mass_spec.md]--> 150112_55.D
150112_56 --[mass_spec.md]--> 150112_56.D
150112_61 --[mass_spec.md]--> 150112_61.D
150112_62 --[mass_spec.md]--> 150112_62.D
150112_65 --[mass_spec.md]--> 150112_65.D
150112_66 --[mass_spec.md]--> 150112_66.D
150115_03 --[mass_spec.md]--> 150115_03.D
150115_04 --[mass_spec.md]--> 150115_04.D
150115_11 --[mass_spec.md]--> 150115_11.D
150115_12 --[mass_spec.md]--> 150115_12.D
150115_13 --[mass_spec.md]--> 150115_13.D
150115_14 --[mass_spec.md]--> 150115_14.D
150115_15 --[mass_spec.md]--> 150115_15.D
150115_16 --[mass_spec.md]--> 150115_16.D
150115_25 --[mass_spec.md]--> 150115_25.D
150115_26 --[mass_spec.md]--> 150115_26.D
CAM_01 --metabolite_extraction.md--> DB23
CAM_02 --metabolite_extraction.md--> DB24
CAM_03 --metabolite_extraction.md--> DB26
reC3_01 --metabolite_extraction.md--> DB39
reC3_02 --metabolite_extraction.md--> DB40
reC3_03 --metabolite_extraction.md--> DB41
Std.Mix5µM --gas_chromatography.md--> 150112_03
Std.Mix5µM --gas_chromatography.md--> 150112_04
blank1 --gas_chromatography.md--> 150112_15
blank1 --gas_chromatography.md--> 150112_16
DB23 --gas_chromatography.md--> 150112_55
DB23 --gas_chromatography.md--> 150112_56
DB24 --gas_chromatography.md--> 150112_61
DB24 --gas_chromatography.md--> 150112_62
DB26 --gas_chromatography.md--> 150112_65
DB26 --gas_chromatography.md--> 150112_66
Std.Mix5µM --gas_chromatography.md--> 150115_03
Std.Mix5µM --gas_chromatography.md--> 150115_04
DB39 --gas_chromatography.md--> 150115_11
DB39 --gas_chromatography.md--> 150115_12
DB40 --gas_chromatography.md--> 150115_13
DB40 --gas_chromatography.md--> 150115_14
DB41 --gas_chromatography.md--> 150115_15
DB41 --gas_chromatography.md--> 150115_16
blank2 --gas_chromatography.md--> 150115_25
blank2 --gas_chromatography.md--> 150115_26
150112_03 --mass_spec.md--> 150112_03.D
150112_04 --mass_spec.md--> 150112_04.D
150112_15 --mass_spec.md--> 150112_15.D
150112_16 --mass_spec.md--> 150112_16.D
150112_55 --mass_spec.md--> 150112_55.D
150112_56 --mass_spec.md--> 150112_56.D
150112_61 --mass_spec.md--> 150112_61.D
150112_62 --mass_spec.md--> 150112_62.D
150112_65 --mass_spec.md--> 150112_65.D
150112_66 --mass_spec.md--> 150112_66.D
150115_03 --mass_spec.md--> 150115_03.D
150115_04 --mass_spec.md--> 150115_04.D
150115_11 --mass_spec.md--> 150115_11.D
150115_12 --mass_spec.md--> 150115_12.D
150115_13 --mass_spec.md--> 150115_13.D
150115_14 --mass_spec.md--> 150115_14.D
150115_15 --mass_spec.md--> 150115_15.D
150115_16 --mass_spec.md--> 150115_16.D
150115_25 --mass_spec.md--> 150115_25.D
150115_26 --mass_spec.md--> 150115_26.D
end
```
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