README.md

@@ -46,9 +46,9 @@ The [Assays (A)](https://git.nfdi4plants.org/sankaran/Sankaranarayanan-2023/-/tr
 
 [S2_A1_microscopy_Rrm4_Ada_strains_DIC+Rrm4-GFP](https://git.nfdi4plants.org/sankaran/Sankaranarayanan-2023/-/tree/master/assays/S2_A1_microscopy_Rrm4-Ada_Rrm4-Gfp) Figure S2C-F  
 [S2_A2_protein_expression
-](https://git.nfdi4plants.org/sankaran/Sankaranarayanan-2023/-/tree/master/assays/S2_A2_protein_expression) Figure S3 A-B  
+](https://git.nfdi4plants.org/sankaran/Sankaranarayanan-2023/-/tree/master/assays/S2_A2_protein_expression) Figure S3 A  
 [S2_A3_microscopy_Rfp_Gfp
-](https://git.nfdi4plants.org/sankaran/Sankaranarayanan-2023/-/tree/master/assays/S2_A3_microscopy_Rfp_Gfp) Figure S3 C  
+](https://git.nfdi4plants.org/sankaran/Sankaranarayanan-2023/-/tree/master/assays/S2_A3_microscopy_Rfp_Gfp) Figure S3 B-C  
 [S2_A4_HyperTRIBE_Rrm4_analysis
 ](https://git.nfdi4plants.org/sankaran/Sankaranarayanan-2023/-/tree/master/assays/S2_A4_HyperTRIBE_Rrm4_analysis) Figure 2C, Figure S4 A-D  
 [S2_A5_HyperTRIBE_Rrm4_iCLIP

assays/S1_A1_microscopy_yeast/README.md

+# S1_A1_microscopy_yeast
+This assay includes the data of the microscopy experiment of the WT and khd4D yeast strain shown in Figure S1.  
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assays/S1_A2_microscopy_hyphae/README.md

+# S1_A2_microscopy_hyphae
+This assay includes microscopy data and quantification of hyphae of the WT and khd4D strain shown in Figure 1.
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assays/S2_A1_microscopy_Rrm4-Ada_Rrm4-Gfp/README.md

+# S2_A1_microscopy_Rrm4-Ada_Rrm4-Gfp
+This assay includes microscopy data and quantification of 2805 - pcr1:rrm4-ada-gfp (ip), 2807 - pcrg1:rrm4-gfp (ip), Rrm4-Gfp - prrm4: rrm4-Gfp strains shown in Figure S2C-F.
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assays/S2_A2_protein_expression/README.md

+# S2_A2_protein_expression
+This assay includes western blot images of the Rrm4-hyperTRIBE constructs shown in Figure S3 A. 
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assays/S2_A3_microscopy_Rfp_Gfp/README.md

+# S2_A3_microscopy_Rfp_Gfp
+This assay includes flourescence measurement data and microscopic images of the Rrm4-hyperTRIBE constructs shown in Figure S3 B/C.  
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assays/S2_A4_HyperTRIBE_Rrm4_analysis/README.md

+# S2_A4_HyperTRIBE_Rrm4_analysis 
+This assay includes RNAseq files (raw/processed) and the script used for the analysis of the Rrm4-Ada-GFP constructs shown in Figure 2C and Figure S4 A-D  
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assays/S2_A5_HyperTRIBE_Rrm4_iCLIP/README.md

+# S2_A5_HyperTRIBE_Rrm4_iCLIP
+This assay includes the script used for the analysis shown in Figure 2D and Figure S4 E-G  

assays/S3_A1_microscopy_Khd4-Gfp/README.md

+# S3_A1_microscopy_Khd4-Gfp 
+This assay includes microscopy data and quantification of WT, khd4D, pcrg1:khd4-ada-gfp, pcrg1:khd4-gfp and pcrg1:mKate2-ada-gfp strain shown in Figure S5 C-E  
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assays/S3_A2_Khd4-Ada-strains_protein_expression/README.md

+# S3_A2_Khd4-Ada-strains_protein_expression
+This assay includes includes western blot images of the Khd4-hyperTRIBE constructs shown in Figure S5 F-G 
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assays/S3_A3_HyperTRIBE_Khd4_workflow/README.md

+# S3_A3_HyperTRIBE_Khd4_workflow
+This assay includes the RNAseq files (raw/processed) and scripts used for the analysis of the Kdh4-Ada-GFP constructs shown in Figure 3A, Figure S6A.  
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assays/S3_A4_HyperTRIBE_motif_analysis/README.md

+# S3_A3_HyperTRIBE_motif_analysis
+This assay includes the scripts used for the motif analysis of the Kdh4-Ada-GFP constructs shown in Figure S6 B-E, Figure 3, Figure S7, Figure S8 A-D  
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assays/S3_A5_GO-term/README.md

+# S3_A5_GO-term
+This assay includes the scripts used for the GO-term analysis of the Kdh4-Ada-GFP constructs shown S8 E, Figure S9  
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assays/S4_A1_RNAseq_data/README.md

+# S4_A1_RNAseq_data
+This assay includes RNAseq data (raw / processed ) for  khd4D and WT yeast and hyphae shown in Figure 4 A-C, Fig S10A   
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assays/S4_A2_RNAseq_analysis_khd4D_vs_wt_hyphae/README.md

+# S4_A2_RNAseq_analysis_khd4D_vs_wt_hyphae
+This assay includes the script for RNAseq analysis for khd4D and WT yeast and hyphae shown in Figure 4 A-C, Fig S10A . 
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assays/S5_A1_microscopy_khd4-targets/README.md

+# S5_A1_microscopy_khd4-targets 
+This assay includes microscopic images of the differnt motife strains shown in Figure S10B.

assays/S5_A1_microscopy_khd4-targets/dataset/README.md

+3139: AB33 Ptef: kat_no motif / Pcrg1: khd4-gfp / khd4Δ / upp3Δ
+3140: AB33 Ptef: kat_(auaccc)6 / Pcrg1: khd4-gfp / khd4Δ / upp3Δ
+3141: AB33 Ptef: kat_(agaucu)6 / Pcrg1: khd4-gfp / khd4Δ / upp3Δ
+3238: AB33 Ptef: kat_(auaccc) / Pcrg1: khd4-gfp /khd4Δ/upp3Δ
+3239: AB33 Ptef: kat_(agaucu) / Pcrg1: khd4-gfp /khd4Δ/upp3Δ
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assays/S5_A2_Kat_protein_level/README.md

+# S5_A2_Kat_protein_level
+This assay include the raw data of the Kat flourescence levels measured in on and off conditions shown in Figure S10C and Figure 4E.  
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assays/S5_A3_Kat_mRNA_level/README.md

+# S5_A3_Kat_mRNA_level
+This assay include the mKate2_mRNA expression data shown in Figure 4F  .  
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assays/S6_A1_RNAseq_analysis_yeast_vs_hyphae/README.md

+# S6_A1_RNAseq_analysis_yeast_vs_hyphae
+This assay includes script to analyse the differential gene expression and GO-term analysis (yeast versus hyphae) shown in Figure 5 A-C, Figure 6, and Figure S13 A-B.  
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