workflows/BSA/readme.txt

workflows/annotation_analysis/R2R3_analysis_reannotation.Rmd

...otation_analysis/betalain_and_flavonoid_identification.sh

...ws/annotation_analysis/betalain_phylogenetic_analysis.Rmd

workflows/annotation_analysis/circos_plotting.Rmd

workflows/annotation_analysis/readme.txt

workflows/braker2/braker2_prot.sh

workflows/braker2/braker2_prot_rna.sh

workflows/braker2/index_STAR.sh

workflows/braker2/readme.txt

workflows/braker2/run_STAR.sh

...s/functional_annotation/analyse_functional_annotation.Rmd

workflows/functional_annotation/readme.txt

workflows/functional_annotation/run_interproscan.sh

...e_expression_quantification/isoseq_expression_support.Rmd

...uantification/plot_expression_quantification_kallisto.Rmd

workflows/gene_expression_quantification/readme.txt

workflows/gene_expression_quantification/run_kallisto.sh

workflows/genome_polishing/readme.txt

workflows/isoseq_assembly/combined_isoseq3_pipeline.sh