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Commit ab629860 authored by Angela Kranz's avatar Angela Kranz
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Update README.md

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......@@ -8,6 +8,15 @@ Briefly, DNA was extracted, short fragments filtered out, DNA purity confirmed,
![](./protocols/workflow_genome.png)
## Assay Metadata
| Input [Source Name] | Protocol REF | Protocol Description | Component [next generation sequencing instrument model] | Characteristic [Sequencing Library Source Indicator] | Parameter [Library selection] | Parameter [library strategy] | Parameter [library layout] | Output [Data]
| ------ | ------ | ------ | ------ |------ | ------ | ------ |------ | ------
| R. nigrum cv Rosenthals Langtraubige_Leaves | DNA_library_prep | [Protocol](https://git.nfdi4plants.org/usadellab/ribes_nigrum_genome/-/blob/main/assays/Ribes_nigrum_genome_sequencing/protocols/DNA%20library%20construction%20and%20sequencing.docx?ref_type=heads) | Oxford Nanopore PromethION | Genomic DNA | size fractionation | Whole Genome Sequencing | single-end | Ribes_nigrum_DNA_raw_ONT
| R. nigrum cv Rosenthals Langtraubige_Leaves | DNA_library_prep | [Protocol](https://git.nfdi4plants.org/usadellab/ribes_nigrum_genome/-/blob/main/assays/Ribes_nigrum_genome_sequencing/protocols/DNA%20library%20construction%20and%20sequencing.docx?ref_type=heads) | PacBio RS | Genomic DNA | size fractionation | Whole Genome Sequencing | single-end | Ribes_nigrum_DNA_raw_PacBio
| R. nigrum cv Rosenthals Langtraubige_Leaves | DNA_library_prep | [Protocol](https://git.nfdi4plants.org/usadellab/ribes_nigrum_genome/-/blob/main/assays/Ribes_nigrum_genome_sequencing/protocols/DNA%20library%20construction%20and%20sequencing.docx?ref_type=heads) | Illumina NovaSeq 6000 | Genomic DNA | size fractionation | Whole Genome Sequencing | paired-end | Ribes_nigrum_DNA_raw_Illumina
## Related repositories and files
This assay folder contains all information for the DNA isolation, library preparation and sequencing.
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