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Benedikt Venn
Ru_ChlamyHeatstress
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98132186
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98132186
authored
2 years ago
by
Benedikt Venn
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update ReadMe
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.gitattributes
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**/dataset/** filter=lfs diff=lfs merge=lfs -text
**/dataset/** filter=lfs diff=lfs merge=lfs -text
/assays/Transcriptomics/dataset/fastq/40C/recovery_02h/SRR15481389/SRR15481389_1.fastq.gz filter=lfs diff=lfs merge=lfs -text
/assays/Transcriptomics/dataset/fastq/40C/recovery_02h/SRR15481389/SRR15481389_2.fastq.gz filter=lfs diff=lfs merge=lfs -text
/assays/Transcriptomics/dataset/fastq/40C/recovery_02h/SRR15481390/SRR15481390_1.fastq.gz filter=lfs diff=lfs merge=lfs -text
/assays/Transcriptomics/dataset/fastq/40C/recovery_02h/SRR15481390/SRR15481390_2.fastq.gz filter=lfs diff=lfs merge=lfs -text
/assays/Transcriptomics/dataset/fastq/40C/recovery_02h/SRR15481391/SRR15481391_1.fastq.gz filter=lfs diff=lfs merge=lfs -text
/assays/Transcriptomics/dataset/fastq/40C/recovery_02h/SRR15481391/SRR15481391_2.fastq.gz filter=lfs diff=lfs merge=lfs -text
/assays/Transcriptomics/dataset/fastq/40C/recovery_04h/SRR15481392/SRR15481392_1.fastq.gz filter=lfs diff=lfs merge=lfs -text
/assays/Transcriptomics/dataset/fastq/40C/recovery_04h/SRR15481392/SRR15481392_2.fastq.gz filter=lfs diff=lfs merge=lfs -text
/assays/Transcriptomics/dataset/fastq/40C/recovery_04h/SRR15481393/SRR15481393_1.fastq.gz filter=lfs diff=lfs merge=lfs -text
/assays/Transcriptomics/dataset/fastq/40C/recovery_04h/SRR15481393/SRR15481393_2.fastq.gz filter=lfs diff=lfs merge=lfs -text
/assays/Transcriptomics/dataset/fastq/40C/recovery_04h/SRR15481394/SRR15481394_1.fastq.gz filter=lfs diff=lfs merge=lfs -text
/assays/Transcriptomics/dataset/fastq/40C/recovery_04h/SRR15481394/SRR15481394_2.fastq.gz filter=lfs diff=lfs merge=lfs -text
/assays/Transcriptomics/dataset/fastq/40C/recovery_08h/SRR15481395/SRR15481395_1.fastq.gz filter=lfs diff=lfs merge=lfs -text
/assays/Transcriptomics/dataset/fastq/40C/recovery_08h/SRR15481395/SRR15481395_2.fastq.gz filter=lfs diff=lfs merge=lfs -text
/assays/Transcriptomics/dataset/fastq/40C/recovery_08h/SRR15481396/SRR15481396_1.fastq.gz filter=lfs diff=lfs merge=lfs -text
/assays/Transcriptomics/dataset/fastq/40C/recovery_08h/SRR15481396/SRR15481396_2.fastq.gz filter=lfs diff=lfs merge=lfs -text
/assays/Transcriptomics/dataset/fastq/40C/recovery_08h/SRR15481397/SRR15481397_1.fastq.gz filter=lfs diff=lfs merge=lfs -text
/assays/Transcriptomics/dataset/fastq/40C/recovery_08h/SRR15481397/SRR15481397_2.fastq.gz filter=lfs diff=lfs merge=lfs -text
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README.md
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@@ -15,22 +15,22 @@ Journal: Commun Biol. 2022 May 13;5(1):460. doi: 10.1038/s42003-022-03359-z. PMI
...
@@ -15,22 +15,22 @@ Journal: Commun Biol. 2022 May 13;5(1):460. doi: 10.1038/s42003-022-03359-z. PMI
## Sampling schema
## Sampling schema
|time point [h]|condition |temperature [°C]|sample name|description|
|time point [h]|condition |temperature [°C]|sample name|description|
sample taken Proteomics =16|sample taken Transcriptomics =15|
|---|--|--|--|--|
|---|--|--|--|--|
--|--|
|-20|control|25|pre1||
|-20|control|25|pre1||
x||
|-18|control|25|pre2||
|-18|control|25|pre2|
preheat|x|x
|
|0|start heat treatment|25 -> 35/40|HS_T00h|reach
treatment
temperature|
|0|start heat treatment|25 -> 35/40|HS_T00h|
RHT (
reach
high
temperature
)|x|x
|
|0.5|heat treatment|35/40|HS_T00.5h|-|
|0.5|heat treatment|35/40|HS_T00.5h|-|
x|x|
|1|heat treatment|35/40|HS_T01h|-|
|1|heat treatment|35/40|HS_T01h|-|
x|x|
|2|heat treatment|35/40|HS_T02h|-|
|2|heat treatment|35/40|HS_T02h|-|
x|x|
|4|heat treatment|35/40|HS_T04h|-|
|4|heat treatment|35/40|HS_T04h|-|
x|x|
|8|heat treatment|35/40|HS_T08h|-|
|8|heat treatment|35/40|HS_T08h|-|
x|x|
|16|heat treatment|35/40|HS_T16h|-|
|16|heat treatment|35/40|HS_T16h|-|
x|x|
|24|end treatment|35/40 -> 25|HS_T24h|end heat treatment|
|24|end treatment|35/40 -> 25|HS_T24h|end heat treatment|
x|x|
|24|start recovery|25|RE_T00h|RCT (reach control temperature)|
|24|start recovery|25|RE_T00h|RCT (reach control temperature)|
x|x|
|26|recovery|25|RE_T02h|-|
|26|recovery|25|RE_T02h|-|
x|x|
|28|recovery|25|RE_T04h|-|
|28|recovery|25|RE_T04h|-|
x|x|
|32|recovery|25|RE_T08h|-|
|32|recovery|25|RE_T08h|-|
x|x|
|48|recovery|25|RE_T24h|-|
|48|recovery|25|RE_T24h|-|
x|x|
|72|recovery|25|RE_T48h|-|
|72|recovery|25|RE_T48h|-|
x|x|
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