Revert "rename assay"

This reverts commit 1c6646fe

Revert "rename assay"
This reverts commit 1c6646fe
5d24327b · Viktoria Petrova · 1c6646fe · 5d24327b · 5d24327b · 5d24327b
Commit 5d24327b authored 3 weeks ago by Viktoria Petrova
--- a/assays/RNAseq_analysis_of_leaf/isa.assay.xlsx
+++ b/assays/RNAseq_analysis_of_leaf/isa.assay.xlsx
--- a/assays/ThreeDRNAseq/README.md
+++ b/assays/ThreeDRNAseq/README.md
+RNAseq analysis was conducted on the leaf and main shoot apex (MSA) samples separately.
+
+The tables of Count and Transcript per Million (TPM) were obtained using ThreeDRNAseq R package.
+The tables of differentially expressed genes were obtained using EdgeR R package.
+Gene Ontology analysis was performed using the Triticeae-Gene Tribe database (http://wheat.cau.edu.cn/TGT/m15/?navbar=GOEnrichment).
+WCGNA analysis was performed using the WGCNA R package.
--- a/assays/ThreeDRNAseq/dataset/.gitkeep
+++ b/assays/ThreeDRNAseq/dataset/.gitkeep
--- a/assays/ThreeDRNAseq/dataset/Count_leaf/counts_gene_leaf.csv
+++ b/assays/ThreeDRNAseq/dataset/Count_leaf/counts_gene_leaf.csv
--- a/assays/ThreeDRNAseq/dataset/Count_leaf/counts_transcript_leaf.csv
+++ b/assays/ThreeDRNAseq/dataset/Count_leaf/counts_transcript_leaf.csv
--- a/assays/ThreeDRNAseq/dataset/TPM_leaf/TPM_genes_leaf.csv
+++ b/assays/ThreeDRNAseq/dataset/TPM_leaf/TPM_genes_leaf.csv
--- a/assays/ThreeDRNAseq/dataset/TPM_leaf/TPM_transcripts_leaf.csv
+++ b/assays/ThreeDRNAseq/dataset/TPM_leaf/TPM_transcripts_leaf.csv
--- a/assays/ThreeDRNAseq/isa.assay.xlsx
+++ b/assays/ThreeDRNAseq/isa.assay.xlsx
--- a/assays/ThreeDRNAseq/protocols/.gitkeep
+++ b/assays/ThreeDRNAseq/protocols/.gitkeep