README.md

+# ArcPrototype
+
+A prototypic ARC that implements all specification standards accordingly
\ No newline at end of file

runs/ARCMountResult/run.cwl

+cwlVersion: v1.2
+class: Workflow
+
+requirements:
+  MultipleInputFeatureRequirement: {}
+
+inputs:
+  arcDirectory: Directory
+
+steps:
+  ARCMount:
+    run: ../../workflows/ARCMount/workflow.cwl
+    in:
+      arcDirectory: arcDirectory
+    out: [output]
+
+outputs:
+  ARCMountResult:
+    type: File
+    outputSource: ARCMount/output
\ No newline at end of file

runs/ARCMountResult/run.yml

+arcDirectory:
+  class: Directory
+  path: ../../
+
+arc:performer:
+  - class: arc:Person
+    arc:first name: "Caroline"
+    arc:last name: "Ott"
+    arc:email: "ottj@rptu.de"
+    arc:affiliation: "RPTU Kaiserslautern/Landau"
+
+$namespaces:
+  arc: https://github.com/nfdi4plants/ARC_ontology
+
+$schemas:
+  - https://raw.githubusercontent.com/nfdi4plants/ARC_ontology/main/ARC_v2.0.owl

runs/DevcontainerResult/result.csv

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runs/DevcontainerResult/run.cwl

+cwlVersion: v1.2
+class: Workflow
+
+requirements:
+  MultipleInputFeatureRequirement: {}
+
+inputs:
+  arcDirectory: Directory
+
+steps:
+  Devcontainer:
+    run: ../../workflows/Devcontainer/workflow.cwl
+    in:
+      arcDirectory: arcDirectory
+    out: [output]
+
+outputs:
+  DevcontainerResult:
+    type: File
+    outputSource: Devcontainer/output
\ No newline at end of file

runs/DevcontainerResult/run.yml

+arcDirectory:
+  class: Directory
+  path: ../../
+
+arc:performer:
+  - class: arc:Person
+    arc:first name: "Caroline"
+    arc:last name: "Ott"
+    arc:email: "ottj@rptu.de"
+    arc:affiliation: "RPTU Kaiserslautern/Landau"
+
+$namespaces:
+  arc: https://github.com/nfdi4plants/ARC_ontology
+
+$schemas:
+  - https://raw.githubusercontent.com/nfdi4plants/ARC_ontology/main/ARC_v2.0.owl

runs/FSharpArcCapsule.yml

-scriptFile:
-  class: File
-  path: ../workflows/FSharpArcCapsule/script.fsx
-firstArg:
-  class: File
-  path: ../assays/measurement1/dataset/table.csv
-secondArg: ./result.csv

runs/FixedScriptResult/result.csv

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runs/FixedScriptResult/run.cwl

+cwlVersion: v1.2
+class: Workflow
+
+requirements:
+  MultipleInputFeatureRequirement: {}
+
+inputs:
+  firstArg: File
+  secondArg: string
+
+steps:
+  FixedScript:
+    run: ../../workflows/FixedScript/workflow.cwl
+    in:
+      firstArg: firstArg
+      secondArg: secondArg
+    out: [output]
+
+outputs:
+  FixedScriptResult:
+    type: File
+    outputSource: FixedScript/output
\ No newline at end of file