uploaded goterm results

.gitattributes

@@ -17,3 +17,5 @@ assays/S5_A1_HyperTRIBE_Khd4_workflow/dataset/Fig_S6_characterization_of_Khd4_Ad
 assays/S5_A2_HyperTRIBE_motif_analysis/HyperTRIBE_identifies_highly_specific_mRNA_Targets_of_Khd4.html filter=lfs diff=lfs merge=lfs -text
 assays/S5_A2_HyperTRIBE_motif_analysis/Khd4-Ada-Gfp[[:space:]]editing[[:space:]]sites[[:space:]]are[[:space:]]proximal[[:space:]]to[[:space:]]the[[:space:]]AUACCC[[:space:]]motif.html filter=lfs diff=lfs merge=lfs -text
 assays/S5_A2_HyperTRIBE_motif_analysis/Khd4-Ada-Gfp[[:space:]]edited[[:space:]]transcripts[[:space:]]lacking[[:space:]]the[[:space:]]AUACCC[[:space:]]motif[[:space:]]do[[:space:]]not[[:space:]]show[[:space:]]enrichment[[:space:]]for[[:space:]]other[[:space:]]motifs.html filter=lfs diff=lfs merge=lfs -text
+assays/S5_A3_GO-term/dataset/Umaydis_GOterm_annotation.gmt filter=lfs diff=lfs merge=lfs -text
+assays/S5_A3_GO-term/dataset/cytoscape_network_GOterm.cys filter=lfs diff=lfs merge=lfs -text

assays/S5_A3_GO-term/dataset/gProfiler_GO_term_Khd4_bound_mRNA.csv

+1,2,3,GO term_ID,,,,,,,,,child,,,parent,,
+UMAG_00949,probable RAS GTPase-activating protein sar1,3´ UT,GO:0030695,GO:0007264,,,,,,,,,,,,,
+UMAG_02431,Uncharacterized protein,3´ UT,GO:0030696,,,,,,,,,,,,,,
+UMAG_04352,probable MOB1 protein,3´ UT,GO:0046578,GO:0007265,GO:0051056,GO:0007264,,,,,,,,,,,
+UMAG_11909,Putative GTP-binding protein,3´ UT,GO:0007264,,,,,,,,,,,,,,
+UMAG_10313,probable ARL1 - ADP-ribosylation factor,3´ UT,GO:0007264,,,,,,,,,,,,,,
+UMAG_01161,Uncharacterized protein,3´UT,GO:0030695,GO:0005085,GO:0046578,GO:0007265,GO:0051056,GO:0007264,,,,,,,,,
+UMAG_10152,cytokinesis protein Don1,5´ UT,GO:0030695,GO:0005085,GO:0046578,GO:0007265,GO:0051056,GO:0007264,GO:0007266,,,,,,,,
+UMAG_12272,Ste20-like protein kinase with effect on mating,5´ UT,GO:0007265,GO:0007264,GO:0007266,,,,,,,,,,,,
+UMAG_01834,Uncharacterized protein,5´UT,GO:0030695,,,,,,,,,,,,,,
+UMAG_06062,Rho-GAP domain-containing protein,5´UT,GO:0030695,,,,,,,,,,,,,,
+UMAG_10461,SEC7 domain containing protein,ORF,GO:0030695,GO:0005085,GO:0046578,GO:0007265,GO:0051056,GO:0007264,,,,,,,,,
+UMAG_00149,Uncharacterized protein,ORF,GO:0030695,GO:0005085,GO:0046578,GO:0007265,GO:0051056,GO:0007264,,,,MF,GO:0005085,GO:0030695,,,
+UMAG_01378,Uncharacterized protein,ORF,GO:0030695,GO:0005085,GO:0046578,GO:0007265,GO:0051056,GO:0007264,GO:0007266,,,,,,,,
+UMAG_12185,DH domain-containing protein,ORF,GO:0030695,GO:0005085,GO:0046578,GO:0007265,GO:0051056,GO:0007264,GO:0007266,,,BP,GO:0046578,GO:0051056,GO:0007266,GO:0007265,GO:0007264
+UMAG_10305,Rab-GAP TBC domain-containing protein,ORF,GO:0030695,,,,,,,,,,,,,,
+UMAG_15070,probable to GDP/GTP exchange factor Rom2p,ORF,GO:0030695,GO:0005085,GO:0046578,GO:0007265,GO:0051056,GO:0007264,GO:0007266,,,,,,,,
+UMAG_04323,Uncharacterized protein,ORF,GO:0030695,GO:0005085,,,,,,,,,,,,,
+,,,,,,,,,,,,,,,,,
+GeneID,Description,Position,GO term_ID,,,,,,,,,,,,,,
+UMAG_10313,probable ARL1 - ADP-ribosylation factor,3´ UT,GO:0007264,,,,,,,,,,,,,,
+UMAG_02431,Uncharacterized protein,3´ UT,GO:0030696,,,,,,,,,,,,,,
+UMAG_04352,probable MOB1 protein,3´ UT,GO:0007264,,,,,,,,,,,,,,
+UMAG_11909,Putative GTP-binding protein,3´ UT,GO:0007264,,,,,,,,,,,,,,
+UMAG_00949,probable RAS GTPase-activating protein sar1,3´ UT,GO:0030695; GO:0007264,,,,,,,,,,,,,,
+UMAG_01161,Uncharacterized protein,3´UT,GO:0030695; GO:0007264,,,,,,,,,,,,,,
+UMAG_10152,cytokinesis protein Don1,5´ UT,GO:0030695; GO:0007264,,,,,,,,,,,,,,
+UMAG_12272,Ste20-like protein kinase with effect on mating,5´ UT,GO:0007264,,,,,,,,,,,,,,
+UMAG_01834,Uncharacterized protein,5´UT,GO:0030695,,,,,,,,,,,,,,
+UMAG_06062,Rho-GAP domain-containing protein,5´UT,GO:0030695,,,,,,,,,,,,,,
+UMAG_10461,SEC7 domain containing protein,ORF,GO:0030695; GO:0007264,,,,,,,,,,,,,,
+UMAG_00149,Uncharacterized protein,ORF,GO:0030695; GO:0007264,,,,,,,,,,,,,,
+UMAG_01378,Uncharacterized protein,ORF,GO:0030695; GO:0007264,,,,,,,,,,,,,,
+UMAG_12185,DH domain-containing protein,ORF,GO:0030695; GO:0007264,,,,,,,,,,,,,,
+UMAG_10305,Rab-GAP TBC domain-containing protein,ORF,GO:0030695,,,,,,,,,,,,,,
+UMAG_15070,probable to GDP/GTP exchange factor Rom2p,ORF,GO:0030695; GO:0007264,,,,,,,,,,,,,,
+UMAG_04323,Uncharacterized protein,ORF,GO:0030695,,,,,,,,,,,,,,

assays/S5_A3_GO-term/dataset/gProfiler_GO_term_Khd4_bound_mRNA.gem.txt

+GO.ID	Description	p.Val	FDR	Phenotype	Genes
+GO:0030695	GTPase regulator activity	0.0015580229766539884	0.0015580229766539884	+1	UMAG_10461,UMAG_00149,UMAG_01161,UMAG_01378,UMAG_00949,UMAG_01834,UMAG_10152,UMAG_02431,UMAG_12185,UMAG_10305,UMAG_15070,UMAG_04323,UMAG_06062
+GO:0060589	nucleoside-triphosphatase regulator activity	0.0015580229766539884	0.0015580229766539884	+1	UMAG_10461,UMAG_00149,UMAG_01161,UMAG_01378,UMAG_00949,UMAG_01834,UMAG_10152,UMAG_02431,UMAG_12185,UMAG_10305,UMAG_15070,UMAG_04323,UMAG_06062
+GO:0030234	enzyme regulator activity	0.00656421799800359	0.00656421799800359	+1	UMAG_00389,UMAG_10461,UMAG_00698,UMAG_00149,UMAG_01161,UMAG_01378,UMAG_00949,UMAG_01834,UMAG_10152,UMAG_02431,UMAG_12185,UMAG_10305,UMAG_15070,UMAG_04352,UMAG_04323,UMAG_05537,UMAG_06062
+GO:0005085	guanyl-nucleotide exchange factor activity	0.010690823028362743	0.010690823028362743	+1	UMAG_10461,UMAG_00149,UMAG_01161,UMAG_01378,UMAG_10152,UMAG_12185,UMAG_15070,UMAG_04323
+GO:0098772	molecular function regulator activity	0.0120514218652177	0.0120514218652177	+1	UMAG_00389,UMAG_10461,UMAG_00698,UMAG_00149,UMAG_01161,UMAG_01378,UMAG_00949,UMAG_01834,UMAG_10152,UMAG_02431,UMAG_12185,UMAG_10305,UMAG_15070,UMAG_04352,UMAG_04323,UMAG_05537,UMAG_06062
+GO:0003700	DNA-binding transcription factor activity	0.028590709572822438	0.028590709572822438	+1	UMAG_15041,UMAG_00742,UMAG_10005,UMAG_15036,UMAG_01597,UMAG_15042,UMAG_06280,UMAG_12189,UMAG_02835,UMAG_03296,UMAG_03514,UMAG_03557,UMAG_04242,UMAG_05054,UMAG_04806,UMAG_05966
+GO:0050789	regulation of biological process	0.00010792680637933052	0.00010792680637933052	+1	UMAG_15041,UMAG_00389,UMAG_12154,UMAG_10461,UMAG_00698,UMAG_00742,UMAG_00149,UMAG_10005,UMAG_10097,UMAG_01161,UMAG_11301,UMAG_15036,UMAG_01296,UMAG_01378,UMAG_00949,UMAG_01891,UMAG_15093,UMAG_01597,UMAG_01623,UMAG_15042,UMAG_10177,UMAG_05194,UMAG_06280,UMAG_12189,UMAG_10152,UMAG_11909,UMAG_12185,UMAG_02346,UMAG_11410,UMAG_10313,UMAG_02958,UMAG_10335,UMAG_02835,UMAG_03296,UMAG_03305,UMAG_03446,UMAG_03514,UMAG_03557,UMAG_03680,UMAG_03760,UMAG_15070,UMAG_03973,UMAG_04059,UMAG_04242,UMAG_04253,UMAG_04578,UMAG_04579,UMAG_12272,UMAG_04603,UMAG_04671,UMAG_04352,UMAG_05054,UMAG_10916,UMAG_04806,UMAG_05505,UMAG_05966,UMAG_06062,UMAG_11601,UMAG_06087
+GO:0065007	biological regulation	0.0002142329477784967	0.0002142329477784967	+1	UMAG_15041,UMAG_00389,UMAG_12154,UMAG_10461,UMAG_00698,UMAG_00742,UMAG_00149,UMAG_10005,UMAG_10097,UMAG_01161,UMAG_11301,UMAG_15036,UMAG_01296,UMAG_01378,UMAG_00949,UMAG_01834,UMAG_01891,UMAG_15093,UMAG_01597,UMAG_01623,UMAG_15042,UMAG_10177,UMAG_05194,UMAG_06280,UMAG_12189,UMAG_10152,UMAG_02431,UMAG_11909,UMAG_12185,UMAG_02346,UMAG_11410,UMAG_10305,UMAG_10313,UMAG_02958,UMAG_10335,UMAG_02835,UMAG_03296,UMAG_03305,UMAG_03446,UMAG_03514,UMAG_03557,UMAG_03680,UMAG_03760,UMAG_15070,UMAG_03973,UMAG_04059,UMAG_04242,UMAG_04253,UMAG_04578,UMAG_04579,UMAG_12272,UMAG_04603,UMAG_04671,UMAG_04352,UMAG_04423,UMAG_04323,UMAG_05054,UMAG_10916,UMAG_04806,UMAG_05505,UMAG_10210,UMAG_05966,UMAG_06062,UMAG_11601,UMAG_06087
+GO:0046578	regulation of Ras protein signal transduction	0.0003497657522741185	0.0003497657522741185	+1	UMAG_10461,UMAG_00149,UMAG_01161,UMAG_01378,UMAG_10152,UMAG_12185,UMAG_15070,UMAG_04352
+GO:0007265	Ras protein signal transduction	0.0003745356298264662	0.0003745356298264662	+1	UMAG_10461,UMAG_00149,UMAG_01161,UMAG_01378,UMAG_10152,UMAG_12185,UMAG_15070,UMAG_12272,UMAG_04352
+GO:0051056	regulation of small GTPase mediated signal transduction	0.00048409203338101766	0.00048409203338101766	+1	UMAG_10461,UMAG_00149,UMAG_01161,UMAG_01378,UMAG_10152,UMAG_12185,UMAG_15070,UMAG_04352
+GO:0050794	regulation of cellular process	0.0005563734108074192	0.0005563734108074192	+1	UMAG_15041,UMAG_00389,UMAG_10461,UMAG_00742,UMAG_00149,UMAG_10005,UMAG_10097,UMAG_01161,UMAG_11301,UMAG_15036,UMAG_01296,UMAG_01378,UMAG_00949,UMAG_01891,UMAG_15093,UMAG_01597,UMAG_15042,UMAG_10177,UMAG_05194,UMAG_06280,UMAG_12189,UMAG_10152,UMAG_11909,UMAG_12185,UMAG_02346,UMAG_11410,UMAG_10313,UMAG_02958,UMAG_02835,UMAG_03296,UMAG_03305,UMAG_03446,UMAG_03514,UMAG_03557,UMAG_03680,UMAG_03760,UMAG_15070,UMAG_03973,UMAG_04059,UMAG_04242,UMAG_04253,UMAG_04578,UMAG_04579,UMAG_12272,UMAG_04603,UMAG_04671,UMAG_04352,UMAG_05054,UMAG_10916,UMAG_04806,UMAG_05505,UMAG_05966,UMAG_06062,UMAG_11601,UMAG_06087
+GO:0007264	small GTPase mediated signal transduction	0.0025145934586805157	0.0025145934586805157	+1	UMAG_10461,UMAG_00149,UMAG_01161,UMAG_01378,UMAG_00949,UMAG_10152,UMAG_11909,UMAG_12185,UMAG_10313,UMAG_15070,UMAG_12272,UMAG_04352
+GO:0050790	regulation of catalytic activity	0.005067462344808369	0.005067462344808369	+1	UMAG_00389,UMAG_10461,UMAG_00698,UMAG_00149,UMAG_01161,UMAG_01296,UMAG_01378,UMAG_00949,UMAG_01834,UMAG_10152,UMAG_02431,UMAG_12185,UMAG_10305,UMAG_15070,UMAG_12272,UMAG_04352,UMAG_04323,UMAG_06062,UMAG_11601
+GO:0035556	intracellular signal transduction	0.006913553299372791	0.006913553299372791	+1	UMAG_10461,UMAG_00149,UMAG_01161,UMAG_01378,UMAG_00949,UMAG_15093,UMAG_10152,UMAG_11909,UMAG_12185,UMAG_11410,UMAG_10313,UMAG_03305,UMAG_03446,UMAG_03760,UMAG_15070,UMAG_03973,UMAG_12272,UMAG_04671,UMAG_04352,UMAG_06087
+GO:1902531	regulation of intracellular signal transduction	0.007153811899537903	0.007153811899537903	+1	UMAG_10461,UMAG_00149,UMAG_01161,UMAG_01378,UMAG_10152,UMAG_12185,UMAG_03760,UMAG_15070,UMAG_12272,UMAG_04352
+GO:0065009	regulation of molecular function	0.012553810468775807	0.012553810468775807	+1	UMAG_00389,UMAG_10461,UMAG_00698,UMAG_00149,UMAG_01161,UMAG_01296,UMAG_01378,UMAG_00949,UMAG_01834,UMAG_10152,UMAG_02431,UMAG_12185,UMAG_10305,UMAG_15070,UMAG_12272,UMAG_04352,UMAG_04323,UMAG_06062,UMAG_11601
+GO:0007165	signal transduction	0.02377820110264092	0.02377820110264092	+1	UMAG_10461,UMAG_00149,UMAG_01161,UMAG_01378,UMAG_00949,UMAG_15093,UMAG_10177,UMAG_10152,UMAG_11909,UMAG_12185,UMAG_11410,UMAG_10313,UMAG_03305,UMAG_03446,UMAG_03760,UMAG_15070,UMAG_03973,UMAG_12272,UMAG_04671,UMAG_04352,UMAG_06062,UMAG_06087
+GO:0023052	signaling	0.02377820110264092	0.02377820110264092	+1	UMAG_10461,UMAG_00149,UMAG_01161,UMAG_01378,UMAG_00949,UMAG_15093,UMAG_10177,UMAG_10152,UMAG_11909,UMAG_12185,UMAG_11410,UMAG_10313,UMAG_03305,UMAG_03446,UMAG_03760,UMAG_15070,UMAG_03973,UMAG_12272,UMAG_04671,UMAG_04352,UMAG_06062,UMAG_06087
+GO:0007154	cell communication	0.04414425478611278	0.04414425478611278	+1	UMAG_10461,UMAG_00149,UMAG_01161,UMAG_01378,UMAG_00949,UMAG_15093,UMAG_10177,UMAG_10152,UMAG_11909,UMAG_12185,UMAG_11410,UMAG_10313,UMAG_03305,UMAG_03446,UMAG_03760,UMAG_15070,UMAG_03973,UMAG_04242,UMAG_12272,UMAG_04671,UMAG_04352,UMAG_06062,UMAG_06087
+GO:0007266	Rho protein signal transduction	0.04490142010780591	0.04490142010780591	+1	UMAG_01378,UMAG_10152,UMAG_12185,UMAG_15070,UMAG_12272
+GO:0009966	regulation of signal transduction	0.04533168604694459	0.04533168604694459	+1	UMAG_10461,UMAG_00149,UMAG_01161,UMAG_01378,UMAG_10152,UMAG_12185,UMAG_03760,UMAG_15070,UMAG_12272,UMAG_04352
+GO:0023051	regulation of signaling	0.04533168604694459	0.04533168604694459	+1	UMAG_10461,UMAG_00149,UMAG_01161,UMAG_01378,UMAG_10152,UMAG_12185,UMAG_03760,UMAG_15070,UMAG_12272,UMAG_04352
+KEGG:04113	Meiosis - yeast	0.012054610898039367	0.012054610898039367	+1	UMAG_00389,UMAG_15042,UMAG_10177,UMAG_06337,UMAG_11525,UMAG_04059,UMAG_06087
+KEGG:04111	Cell cycle - yeast	0.014450425211853222	0.014450425211853222	+1	UMAG_00389,UMAG_06337,UMAG_03305,UMAG_03446,UMAG_11525,UMAG_04059,UMAG_04352,UMAG_06087
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