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Sample ARC created with the data from the Metabolights project MTBLS338. Only ISA part provided, no CWL (runs and workflows).

Genomce sequencing of blackcurrant (Ribes nigrum)

Reversible Burst of Transcriptional Changes during Induction of Crassulacean Acid Metabolism in Talinum triangulare.

Crassulacean acid metabolism (CAM) has evolved as a water-saving strategy, and its engineering into crops offers an opportunity to improve their water use efficiency. This requires a comprehensive understanding of the regulation of the CAM pathway. Here, we use the facultative CAM species Talinum triangulare as a model in which CAM can be induced rapidly by exogenous abscisic acid. RNA sequencing and metabolite measurements were employed to analyse the changes underlying CAM induction and identify potential CAM regulators. Non-negative matrix factorization followed by k-means clustering identified an early CAM-specific cluster and a late one, which was specific for the early light phase. Enrichment analysis revealed abscisic acid metabolism, WRKY-regulated transcription, sugar and nutrient transport, and protein degradation in these clusters. Activation of the CAM pathway was supported by up-regulation of phosphoenolpyruvate carboxylase, cytosolic and chloroplastic malic enzymes, and several transport proteins, as well as by increased end-of-night titratable acidity and malate accumulation. The transcription factors HSFA2, NF-YA9, and JMJ27 were identified as candidate regulators of CAM induction. With this study we promote the model species T. triangulare, in which CAM can be induced in a controlled way, enabling further deciphering of CAM regulation.

This ARC shows different example data from MibiNet members. The aim is to demonstrate the use of MibiNet related SWATE Templates and the examples for matadata annotation.

A GH81-type β-glucan-binding protein enhances colonization by mutualistic fungi in barley

Pangenome of Camellia sinensis

NGS course within Master module "Plant Genetics" at the University of Cologne

This ARC contains CPlantBox simulations

GridScore trial: A barley trial focusing on date-based traits. This is a good example of a simple setup.

RNA seq from Solanum lycopersicoides plants, performed for the manuscript entitled "A Solanum lycopersicoides reference genome facilitates insights into tomato specialized metabolism and immunity."

Pangenome of Camellia sinensis

"QUINOA DIVERSITY- Quinoa Phenotypic and Genotypic Diversity for Yield and Composition"

This ARC contains CPlantBox simulations

Characterization of the FNR-type regulator GoxR